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The map label for this gene is ycjZ [H]

Identifier: 218703560

GI number: 218703560

Start: 336526

End: 337410

Strand: Reverse

Name: ycjZ [H]

Synonym: ECUMN_0311

Alternate gene names: 218703560

Gene position: 337410-336526 (Counterclockwise)

Preceding gene: 218703563

Following gene: 218703557

Centisome position: 6.49

GC content: 54.12

Gene sequence:

>885_bases
ATGGCGAAAAGGGAGAACTACAACGAGCTGTACCTGTTTATGCAGGTGGTGCGGGAAGGCAGCTTTACCGCAGCGGCTCA
GCGGCTGGGTCTTGCTCAGTCAGGAGTCAGCCGTTCTGTTCGCGAGCTTGAAGAAAGGCTCGGCGTCCAGCTGCTAGTGC
GCACCACGCGTAAACTGTCGCTGACACAAGCAGGCGAGCAGCTCTACCAGAAGACGGCATCTGGATTTGAAATGTTAGAT
CTTGGGCTTGCCACGCTGGCGCACTATCGAGAGACGCCCTCCGGCACGGTGCGTATCAATGCCAGCCAGCACGCGATTGA
TAAATGCCTGCTGCCAAAGCTGGCGGTATTTAAACAGCGATATCCTGATATCCGGCTTGAACTGATAAATGAGAGCCGGT
TCGTCGATATCATCGAGGAAAGATTCGATGCAGGTGTCCGCCTGGGGCCTGAAGTCGGCCAGGGTATGGTCGCGGTACGC
ATCACGCCCGATATGGAGATGGCAATTGTGGGGACTCCGGAACATTTTCGTCGCTATGGTTTTCCGCAAACCCCGGCGGA
TTTAAAGGCGCATCCCTGTATCGCCTATCAGTTTGCCGACGGCAGCGTATACCAGTGGGAACTCAATCAGGATGATAAAA
AAATCACTCATCGCCCTGAAGGGCAATGGGCCTTATCCGACAGCTATATGGAAGCAGAAGCAGCCCGGCTGGGCCTCGGA
TTGGCCTATGTTCCTGTTGAACTGGTCGCGGATGATTTAGAACACGGTAAGCTTATCAGGGTGTTGCAGCGTTACAGCCT
GCGAATGGAGGGATTGTTTCTCTATTACCCTCATCGCAACGTCTCCCCCGCCCTGCGGATGGTCATTGATACATTGAAAA
TCTGA

Upstream 100 bases:

>100_bases
AGCAGAATTAGTGCTGATTAGGGGGCGATTAATGCTAAGATTAATACCATATTGTTATAAATTAATGCGGAGATTGCCGG
CATGAAGGGGGGATGTTTCA

Downstream 100 bases:

>100_bases
ACGTTAATAACGACCGACTCTTCACTGTGCAAAATTGTGTCAGGTAGTCCCTCTGCGTTCAATTCCAGGGTCTGCTTTGA
GCGAGAAAGAGGGGACTATC

Product: putative LysR-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MAKRENYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAGEQLYQKTASGFEMLD
LGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIRLELINESRFVDIIEERFDAGVRLGPEVGQGMVAVR
ITPDMEMAIVGTPEHFRRYGFPQTPADLKAHPCIAYQFADGSVYQWELNQDDKKITHRPEGQWALSDSYMEAEAARLGLG
LAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPHRNVSPALRMVIDTLKI

Sequences:

>Translated_294_residues
MAKRENYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAGEQLYQKTASGFEMLD
LGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIRLELINESRFVDIIEERFDAGVRLGPEVGQGMVAVR
ITPDMEMAIVGTPEHFRRYGFPQTPADLKAHPCIAYQFADGSVYQWELNQDDKKITHRPEGQWALSDSYMEAEAARLGLG
LAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPHRNVSPALRMVIDTLKI
>Mature_293_residues
AKRENYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLSLTQAGEQLYQKTASGFEMLDL
GLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQRYPDIRLELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRI
TPDMEMAIVGTPEHFRRYGFPQTPADLKAHPCIAYQFADGSVYQWELNQDDKKITHRPEGQWALSDSYMEAEAARLGLGL
AYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPHRNVSPALRMVIDTLKI

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=40.9556313993174, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=37.1134020618557, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=32.6388888888889, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI145693193, Length=276, Percent_Identity=31.1594202898551, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=28.6206896551724, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=25.8741258741259, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=23.943661971831, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1786448, Length=283, Percent_Identity=28.2685512367491, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788748, Length=129, Percent_Identity=41.8604651162791, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788706, Length=182, Percent_Identity=29.1208791208791, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=28.1786941580756, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=31.9148936170213, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790011, Length=275, Percent_Identity=23.6363636363636, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=24.9134948096886, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=141, Percent_Identity=29.0780141843972, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787879, Length=141, Percent_Identity=29.7872340425532, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789173, Length=261, Percent_Identity=25.2873563218391, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33373; Mature: 33242

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRENYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLS
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LTQAGEQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHC
YPDIRLELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYG
CCCEEEEEECCCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCEEEEECCHHHHHHCC
FPQTPADLKAHPCIAYQFADGSVYQWELNQDDKKITHRPEGQWALSDSYMEAEAARLGLG
CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
LAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPHRNVSPALRMVIDTLKI
HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AKRENYNELYLFMQVVREGSFTAAAQRLGLAQSGVSRSVRELEERLGVQLLVRTTRKLS
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LTQAGEQLYQKTASGFEMLDLGLATLAHYRETPSGTVRINASQHAIDKCLLPKLAVFKQR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHC
YPDIRLELINESRFVDIIEERFDAGVRLGPEVGQGMVAVRITPDMEMAIVGTPEHFRRYG
CCCEEEEEECCCHHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCEEEEECCHHHHHHCC
FPQTPADLKAHPCIAYQFADGSVYQWELNQDDKKITHRPEGQWALSDSYMEAEAARLGLG
CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
LAYVPVELVADDLEHGKLIRVLQRYSLRMEGLFLYYPHRNVSPALRMVIDTLKI
HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]