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The map label for this gene is lfiN [H]

Identifier: 218703507

GI number: 218703507

Start: 288958

End: 289329

Strand: Reverse

Name: lfiN [H]

Synonym: ECUMN_0255

Alternate gene names: 218703507

Gene position: 289329-288958 (Counterclockwise)

Preceding gene: 218703508

Following gene: 218703506

Centisome position: 5.56

GC content: 53.49

Gene sequence:

>372_bases
ATGAGTAAGCAAGAAGATATTTTAGCCGGGGATTTTGGCCTCACCGATGAAGTTGCGCCTGTCGCGAAATCCGCCGACGC
TGAAACGCTGGTCACCCGCCTGGAAGACCGCTTTTCCGACTCGATGACGCTGTTGAAACGCATTCCGGTGACCTTAACGC
TGGAAGTGTCGTCGGTGGAAATTATGTTAGCCGACCTGCTAAACATCGACGACGACACGGTGATTGAGCTGGATAAACTC
GCCGGGGAGCCGCTGGATATTAAAGTGAACAATATCCTGCTGGGCAAAGCAGAAGTGGTGGTGGTCAACGAGAAGTACGG
CCTGCGCGTGCTGGAGTTTAACACCCGCGATATCAACGACCTGGCACCATGA

Upstream 100 bases:

>100_bases
CCGGTGGCGATTGGGCAATCTGAATTATTTAGCGCCCTGATTGTGGAAGACAAAGACAAACTGTTTTTGTCGGAGCTGGC
GGGCAAAAATGAGAATAGCC

Downstream 100 bases:

>100_bases
AACGCCGCACTCAACTGACGCTGGGCCTTGGGCTGCTGGCGCTTGCGCCGGTGGCGTTGGCCCAGGGGGGCGATATTGCG
CTGCTTAACGTGGTCACCCA

Product: lateral flagellar motor switch C ring FliN-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSKQEDILAGDFGLTDEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKL
AGEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTRDINDLAP

Sequences:

>Translated_123_residues
MSKQEDILAGDFGLTDEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKL
AGEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTRDINDLAP
>Mature_122_residues
SKQEDILAGDFGLTDEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLA
GEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTRDINDLAP

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=72, Percent_Identity=44.4444444444444, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13528; Mature: 13396

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQEDILAGDFGLTDEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVE
CCCCCCEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHE
IMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTRDIND
EEEEHHHCCCCCCEEEEHHHCCCCCEEEECEEEECCEEEEEEECCCCEEEEEECCCCCCC
LAP
CCC
>Mature Secondary Structure 
SKQEDILAGDFGLTDEVAPVAKSADAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVE
CCCCCEEECCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHE
IMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTRDIND
EEEEHHHCCCCCCEEEEHHHCCCCCEEEECEEEECCEEEEEEECCCCEEEEEECCCCCCC
LAP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]