Click here to switch to the map view.

The map label for this gene is yafV [H]

Identifier: 218703492

GI number: 218703492

Start: 274134

End: 274904

Strand: Reverse

Name: yafV [H]

Synonym: ECUMN_0240

Alternate gene names: 218703492

Gene position: 274904-274134 (Counterclockwise)

Preceding gene: 218703494

Following gene: 218703487

Centisome position: 5.28

GC content: 55.25

Gene sequence:

>771_bases
GTGCCTGGTTTGAAGATTACGCTTTTGCAGCAACCACTGGTGTGGATGGATGGTCCTGCCAACCTGCGTCATTTTGATCG
TCAACTGGAAGATATTACCGGACGCGATGTGATCGTTCTACCGGAGATGTTTACCAGCGGCTTTGCCATGGAAGCGGCAG
CTTCGTCGCTAGCACAAGATGACGTAGTGAACTGGATGACAGCCAAAGCGCAGCAGTGCAATGCGCTGATTGCAGGCAGT
GTTGCATTACAAACGGAGTCTGGTTCGGTTAACCGCTTTTTGCTGGTTGAGCCAGGCGGCACGGTACATTTTTATGATAA
GCGTCATCTGTTCCGCATGGCAGATGAGCATCTGCATTATAAAGCGGGCAATGCGCGAGTGATTGTGGAATGGCGCGGCT
GGCGTATTTTGCCGCTGGTGTGCTACGACTTACGTTTTCCTGTGTGGTCGCGCAATCTCAACGATTACGACCTCGCCCTG
TACGTCGCCAACTGGCCGGCTCCGCGCTCTCTGCACTGGCAGGCATTGCTGACGGCCCGCGCGATTGAGAATCAAGCGTA
TGTGGCGGGATGCAATCGCGTCGGCAGCGATGGCAACGGCTGCCATTATCGCGGTGACAGCCGGGTGATTAATCCACAGG
GCGAGATTATCGCCACCGCCGACGCGCATCAGGCAACGCGCATTGATGCGGAGCTGTCGATGGCGGCATTGCGGGAATAT
AGAGAAAAGTTTCCGGCATGGCGGGATGCGGATGAGTTTAGGTTGTGGTGA

Upstream 100 bases:

>100_bases
TTCCAATATCAGCATTTGTTATCAATTTATTCTGCGCTAAGGCAACTGCCTGATAAGGTGTTAAAGTTATAAAACCCTTC
GCATAAAGGAGTTGTACACC

Downstream 100 bases:

>100_bases
GTGGGTGTTGTGTTTAGGGCCGGGGAGAGTCGGGCTAAGACTACGAAAGCCCGCTCCCCTGCGACCACTTTTATCATAGG
AGTGTGGAAGCGCTTTTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MPGLKITLLQQPLVWMDGPANLRHFDRQLEDITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGS
VALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAL
YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREY
REKFPAWRDADEFRLW

Sequences:

>Translated_256_residues
MPGLKITLLQQPLVWMDGPANLRHFDRQLEDITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGS
VALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAL
YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREY
REKFPAWRDADEFRLW
>Mature_255_residues
PGLKITLLQQPLVWMDGPANLRHFDRQLEDITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSV
ALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALY
VANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREYR
EKFPAWRDADEFRLW

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI9910460, Length=233, Percent_Identity=25.7510729613734, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1786412, Length=256, Percent_Identity=99.21875, Blast_Score=528, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 29011; Mature: 28880

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50263 CN_HYDROLASE ; PS01227 UPF0012

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGLKITLLQQPLVWMDGPANLRHFDRQLEDITGRDVIVLPEMFTSGFAMEAAASSLAQD
CCCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHCCCCHHHHHHHHHHHH
DVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHY
HHHHHHHHHHHHCCEEEECEEEEEECCCCCEEEEEECCCCEEEEECCHHHHHHHHHHEEE
KAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTAR
ECCCEEEEEEECCCEEEEEEEEECCCCHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHH
AIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREY
HHCCCEEEEECCCCCCCCCCCEECCCCEEECCCCCEEEECCCCCCEECCHHHHHHHHHHH
REKFPAWRDADEFRLW
HHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PGLKITLLQQPLVWMDGPANLRHFDRQLEDITGRDVIVLPEMFTSGFAMEAAASSLAQD
CCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHCCCCHHHHHHHHHHHH
DVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHY
HHHHHHHHHHHHCCEEEECEEEEEECCCCCEEEEEECCCCEEEEECCHHHHHHHHHHEEE
KAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTAR
ECCCEEEEEEECCCEEEEEEEEECCCCHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHH
AIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAALREY
HHCCCEEEEECCCCCCCCCCCEECCCCEEECCCCCEEEECCCCCCEECCHHHHHHHHHHH
REKFPAWRDADEFRLW
HHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]