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The map label for this gene is ypdB

Identifier: 218700850

GI number: 218700850

Start: 2622163

End: 2622918

Strand: Direct

Name: ypdB

Synonym: ECIAI39_2525

Alternate gene names: 218700850

Gene position: 2622163-2622918 (Clockwise)

Preceding gene: 218700849

Following gene: 218700851

Centisome position: 51.09

GC content: 47.49

Gene sequence:

>756_bases
TTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTTGAAGACGAATTCCTGGCACAACAGGAACTGAGCTGGCTAATTAA
AGAGCACAGCCAGATGGAGATTGTCGGCACCTTTGACGACGGTCTGGACGTGTTGAAGTTTTTGCAGCATAACCGCGTCG
ACGCCATTTTTCTGGATATCAATATTCCGTCGCTGGATGGTGTGTTGCTGGCACAAAACATCAGCCAGTTCGCCCATAAA
CCGTTTATTGTGTTCATCACTGCGTGGAAAGAACATGCGGTGGAAGCATTTGAACTGGAAGCGTTTGACTACATTCTCAA
ACCGTATCAGGAATCACGCATTACCGGGATGCTGCAAAAACTGGAAGCAGCCTGGCAACAACAGCAGACCAGCAGTACGA
CGCCTGCCGCGACGGTAACGCGTGAGAATGACACCATTAATCTGGTGAAAGATGAGCGAATCATCGTCACGCCCATTAAC
GATATCTATTACGCCGAAGCGCATGAGAAAATGACCTTTGTCTATACGCGGCGTGAATCCTACGTAATGCCGATGAACAT
TACCGAGTTTTGCAGCAAGCTGCCGCCGTCGCATTTTTTCCGCTGCCATCGCTCATTTTGTGTCAATCTGAACAAAATCC
GCGAGATCGAACCGTGGTTTAATAACACCTATATTCTGCGGCTGAAAGATCTGGATTTTGAAGTGCCGGTCAGCCGCAGC
AAAGTTAAAGAATTCCGCCAGTTAATGCATCTTTAA

Upstream 100 bases:

>100_bases
GCGAGGGGCTGCATATCCGCCGCCTGGAACCAGGAACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCC
TCACAGGCTACCTTATTGCT

Downstream 100 bases:

>100_bases
TCGGGAACTTTCATGAAAGCACCAGGCTTGCCCGCCGATCAACAATTTTTCGCAGATCTGTTCAGCGGCCTGGTGCTTAA
CCCGCAACTACTGGGGCGCG

Product: putative response regulator in two-component system with YpdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSRSDIVKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHK
PFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTTPAATVTRENDTINLVKDERIIVTPIN
DIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRS
KVKEFRQLMHL

Sequences:

>Translated_251_residues
MSRSDIVKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHK
PFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTTPAATVTRENDTINLVKDERIIVTPIN
DIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRS
KVKEFRQLMHL
>Mature_250_residues
SRSDIVKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKP
FIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQKLEAAWQQQQTSSTTPAATVTRENDTINLVKDERIIVTPIND
IYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSK
VKEFRQLMHL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=245, Percent_Identity=99.1836734693878, Blast_Score=502, Evalue=1e-144,
Organism=Escherichia coli, GI87082052, Length=248, Percent_Identity=31.4516129032258, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29480; Mature: 29349

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSDIVKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDI
CCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEE
NIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQK
ECCCCCCHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHH
LEAAWQQQQTSSTTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRES
HHHHHHHHHCCCCCCCEEEEECCCEEEEEECCEEEEEECCCEEEECCCCEEEEEEEECCC
YVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRS
EEECCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCEECCCCHH
KVKEFRQLMHL
HHHHHHHHHCC
>Mature Secondary Structure 
SRSDIVKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDI
CCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEE
NIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRITGMLQK
ECCCCCCHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHH
LEAAWQQQQTSSTTPAATVTRENDTINLVKDERIIVTPINDIYYAEAHEKMTFVYTRRES
HHHHHHHHHCCCCCCCEEEEECCCEEEEEECCEEEEEECCCEEEECCCCEEEEEEEECCC
YVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLDFEVPVSRS
EEECCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEEECCCEECCCCHH
KVKEFRQLMHL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]