Click here to switch to the map view.

The map label for this gene is ycbX

Identifier: 218700534

GI number: 218700534

Start: 2246774

End: 2247883

Strand: Direct

Name: ycbX

Synonym: ECIAI39_2200

Alternate gene names: 218700534

Gene position: 2246774-2247883 (Clockwise)

Preceding gene: 218700527

Following gene: 218700544

Centisome position: 43.78

GC content: 50.18

Gene sequence:

>1110_bases
GTGGCGACATTAACCCGGCTTTTTATTCATCCTGTTAAATCGATGCGCGGCATTGGTCTTACACATACCCTGGCAGATGT
CAGTGGTCTGGCCTTCGATCGCATCTTTATGATCACGGAACCTGACGGTACGTTTATTACCGCTCGCCAGTTTCCGCTAA
TGGTACGGTTTACTCCTTCACCCGTGCATGATGGCTTGCATCTCACCGCACCAGATGGCAGTAGTGCATATGTTCGTTTT
GCTGATTTCGCCACACAAGACGCACCAACCGAAGTTTGGGGCACACATTTTACCGCGCGAATTGCGCCAGACGCGATCAA
CAAATGGCTAAGTGGATTTTTCTCCCGCGAAGTGCAATTACGCTGGGTGGGGCCACAAATGACCCGGCGCGTGAAACGCC
ACAACACTGTACCCCTGTCATTTGCTGATGGTTATCCTTACCTTCTTGCTAACGAGGCCTCGTTACGTGATCTCCAACAA
CGTTGTCCGGCCAGTGTAAAAATGGAGCAATTCCGCCCCAATCTGGTGGTTTCCGGTGCATCGGCCTGGGAAGAAGATAG
CTGGAAAGTGATTCGCATTGGTGATGTCGTGTTTGATGTGGTTAAGCCTTGTAGCCGCTGTATTTTCACCACCGTCAGCC
CAGAAAAAGGGCAAAAACATCCGGCAGGCGAACCATTAAAAACGCTGCAATCTTTCCGTACTGCCCAGGATAACGGCGAT
GTCGATTTTGGTCAGAATTTAATTGCCCGTAATAGCGGCGTGATTCGCGTTGGCGATGAGGTGGAAATTCTGGCAACGGC
TCCAGCTAAAATTTACGGCGCAGGTGCCGCTGATGATACTGCCAACATCACGCAACAACCGGACGCAAACGTAGATATTG
ACTGGCAGGGACAGGCATTTCGTGGAAATAACCAACAGGTGCTGCTGGAGCAATTAGAAAATCAGGGAATTCGTATCCCT
TATTCTTGCCGCGCGGGCATTTGTGGAAGTTGCCGTGTTCAGCTTTTAGAAGGCGAAGTCACGCCGCTGAAAAAATCAGC
AATGGGTGATGATGGCACTATTCTTTGCTGTAGTTGTGTACCGAAGACTGCACTTAAGCTGACGCGTTAA

Upstream 100 bases:

>100_bases
CATATCGTCACTTTTACTCTAAGAAAATTGTTGCGCATTATAGCTAATAAGCGCGTCATGTCATAAAGTTGAGGGCTTAT
TTTCATTTGAGGACCGCACC

Downstream 100 bases:

>100_bases
ACTGCCTGTTCGAGGCTGAAGCTGTCAACATTAACCTGCGGTTTCAGCCTGTCGTTCATGATTTTGATGGCGTCGCCCAG
CTGCATCGCGCGACCCGCAA

Product: putative 2Fe-2S cluster-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MATLTRLFIHPVKSMRGIGLTHTLADVSGLAFDRIFMITEPDGTFITARQFPLMVRFTPSPVHDGLHLTAPDGSSAYVRF
ADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
RCPASVKMEQFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAGAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIP
YSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLTR

Sequences:

>Translated_369_residues
MATLTRLFIHPVKSMRGIGLTHTLADVSGLAFDRIFMITEPDGTFITARQFPLMVRFTPSPVHDGLHLTAPDGSSAYVRF
ADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
RCPASVKMEQFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAGAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIP
YSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLTR
>Mature_368_residues
ATLTRLFIHPVKSMRGIGLTHTLADVSGLAFDRIFMITEPDGTFITARQFPLMVRFTPSPVHDGLHLTAPDGSSAYVRFA
DFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQR
CPASVKMEQFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDV
DFGQNLIARNSGVIRVGDEVEILATAPAKIYGAGAADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPY
SCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLTR

Specific function: Unknown

COG id: COG3217

COG function: function code R; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MOSC domain [H]

Homologues:

Organism=Homo sapiens, GI224600454, Length=283, Percent_Identity=32.8621908127208, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI31542713, Length=280, Percent_Identity=30.7142857142857, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI157388923, Length=241, Percent_Identity=24.4813278008299, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1787179, Length=369, Percent_Identity=98.3739837398374, Blast_Score=754, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17540702, Length=279, Percent_Identity=30.1075268817204, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17561286, Length=258, Percent_Identity=31.0077519379845, Blast_Score=104, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71990971, Length=261, Percent_Identity=30.6513409961686, Blast_Score=104, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI25147498, Length=238, Percent_Identity=27.3109243697479, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI45550400, Length=289, Percent_Identity=29.757785467128, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI17647607, Length=249, Percent_Identity=27.710843373494, Blast_Score=78, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR005302
- InterPro:   IPR005303
- InterPro:   IPR011037 [H]

Pfam domain/function: PF00111 Fer2; PF03473 MOSC; PF03476 MOSC_N [H]

EC number: NA

Molecular weight: Translated: 40595; Mature: 40463

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLTRLFIHPVKSMRGIGLTHTLADVSGLAFDRIFMITEPDGTFITARQFPLMVRFTPS
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEECCCCCEEEEECCEEEEEECCC
PVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQL
CCCCCCEEECCCCCCEEEEEEECCCCCCCCHHHCCCEEEEECHHHHHHHHHHHHCCEEEE
RWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGA
EEECHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCCEEEECC
SAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCC
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAGAADDTANITQQPDANVDIDWQGQAF
CCCCCHHHHCCCCEEEECCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEECCCEE
RGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCV
CCCCHHHHHHHHHCCCEEEEHHCCCCCCCCCEEEEECCCCCCCHHHCCCCCCCEEEEECC
PKTALKLTR
CCCHHCCCC
>Mature Secondary Structure 
ATLTRLFIHPVKSMRGIGLTHTLADVSGLAFDRIFMITEPDGTFITARQFPLMVRFTPS
CHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEECCCCCEEEEECCEEEEEECCC
PVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQL
CCCCCCEEECCCCCCEEEEEEECCCCCCCCHHHCCCEEEEECHHHHHHHHHHHHCCEEEE
RWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGA
EEECHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCCEEEECC
SAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCC
VDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAGAADDTANITQQPDANVDIDWQGQAF
CCCCCHHHHCCCCEEEECCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEECCCEE
RGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAMGDDGTILCCSCV
CCCCHHHHHHHHHCCCEEEEHHCCCCCCCCCEEEEECCCCCCCHHHCCCCCCCEEEEECC
PKTALKLTR
CCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]