Click here to switch to the map view.

The map label for this gene is ycbZ

Identifier: 218700526

GI number: 218700526

Start: 2236221

End: 2237981

Strand: Direct

Name: ycbZ

Synonym: ECIAI39_2192

Alternate gene names: 218700526

Gene position: 2236221-2237981 (Clockwise)

Preceding gene: 218700524

Following gene: 218700527

Centisome position: 43.57

GC content: 51.79

Gene sequence:

>1761_bases
TTGACCATTACGAAACTTGCATGGCGTGACCTGGTTCCTGATACCGATAGCTATCAGGAAATATTTGCTCAGCCACATTT
GATTGACGAAAACGATCCTTTATTCAGTGATACTCAACCGCGACTGCAATTTGCGCTGGAGCAGTTGCTGCATACGCGAG
CATCCTCCTCTTTTATGCTGGCGAAGGCCCCGGAAGAGTCTGAGTATCTGAATCTTATTGCCGATGCCGCGCGTGCGCTA
CAAAGCGATGCAGGCCAACTGGTGGGCGGTCACTATGAGGTTTCCGGGCACACCATCCGTTTACGTAACGCAGTGAGTGC
AGATGATAATTTTGCGACTTTAACGCAAGTTGTCGCTGCCGACTGGGTAGAAGCGGAACAACTCTTTGGCTGCCTGCGCC
AGTTTAATGGCGACATTACCCTGCAGCCTGGTCTGGTGCATCAGGCAAATGGCGGTATTCTCATCATCTCTTTGCGTACA
CTGCTGGCGCAACCTCTGCTGTGGATGCGGCTGAAAAATATCGTTAACCGCGAGCGTTTTGACTGGGTTGCGTTTGATGA
GTCGCGCCCTCTCCCCGTCTCTGTGCCTTCGATGCCATTGAAGCTGAAAGTCATTCTGGTAGGCGAACGCGAATCATTGG
CTGATTTCCAGGAGATGGAACCAGAGCTTTCAGAGCAGGCTATTTATAGCGAATTTGAAGATACTCTGCAGATTGTCGAT
GCGGAGTCAGTAAGCCAGTGGTGTCGCTGGGTAACATTGACCGCAAGACATAATCACTTACCTGCACCGGGAGCGGATGC
CTGGCCAGTACTTATCCGCGAAGCAGCCCGCTACACCGGTGAACAAGAAACACTTCCGCTTAGCCCGCAGTGGATCCTCC
GCCAGTGTAAAGAGGTCGCCTCCCTGTGCGATGGCGACACCTTCTCCGGCGAGCAGCTAAACTTAATGCTGCAGCAGCGT
GAATGGCGTGAAGGTTTCCTCGCTGAACGCATGCAGGATGAGATCCTTCAGGAGCAAATCCTGATTGAAACCGAAGGCGA
ACGCATCGGGCAAATTAACGCCCTTTCGGTCATTGAATTTCCGGGTCATCCACGCGCTTTTGGCGAACCTTCTCGCATTA
GCTGCGTTGTGCATATTGGCGATGGTGAATTCACCGACATCGAACGCAAAGCGGAGCTTGGCGGCAATATCCATGCGAAA
GGGATGATGATCATGCAAGCGTTCCTGATGTCGGAACTACAGCTTGAGCAACAGATCCCCTTCTCAGCATCGCTGACATT
TGAGCAGTCATACAGTGAAGTGGATGGCGATAGTGCCTCGATGGCTGAACTCTGCGCCCTGATCAGCGCCCTCGCCGATG
TGCCGGTGAATCAGAGTATCGCTATCACAGGTTCAGTCGATCAGTTCGGTCGCGCCCAGCCAGTCGGTGGTTTAAATGAG
AAAATCGAAGGCTTCTTTGCTATTTGCCAGCAACGTGAGTTAACGGGGAAACAAGGTGTCATTATCCCCACTGCTAACGT
TCGCCATTTAAGTCTTCACAGTGAACTGGTGAAAGCGGTAGAAGAAGGCAAATTCACCATCTGGGCAGTAGACGATGTGA
CTGACGCACTGCCGTTATTATTAAATCTGGTGTGGGATGGCGAAGGCCAAACGACGCTGATGCAAACCATCCAGGAACGT
ATCGCACAAGCATCGCAACAGGAAGGACGTCACCGTTTTCCATGGCCATTACGTTGGCTGAACTGGTTTATTCCGAACTG
A

Upstream 100 bases:

>100_bases
TAACGCCCATGCCAGGAGTATTGTCGGTGCTTTCTACGTGTGCTGCAGTGCCGGTTACGGTATAATCGCGGCTTTGACAA
CAGACTAAAAAACATCAACT

Downstream 100 bases:

>100_bases
TCGGACTTGTTCAGCGTACACGTGTTAGCTATCCTGCGTGCTTCAATAAAATAAGGCTTACAGAGAACATGGTAGATAAA
CGCGAATCCTATACAAAAGA

Product: putative ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 586; Mature: 585

Protein sequence:

>586_residues
MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFMLAKAPEESEYLNLIADAARAL
QSDAGQLVGGHYEVSGHTIRLRNAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVD
AESVSQWCRWVTLTARHNHLPAPGADAWPVLIREAARYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQR
EWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAK
GMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
KIEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQER
IAQASQQEGRHRFPWPLRWLNWFIPN

Sequences:

>Translated_586_residues
MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFMLAKAPEESEYLNLIADAARAL
QSDAGQLVGGHYEVSGHTIRLRNAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVD
AESVSQWCRWVTLTARHNHLPAPGADAWPVLIREAARYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQR
EWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAK
GMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
KIEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQER
IAQASQQEGRHRFPWPLRWLNWFIPN
>Mature_585_residues
TITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFMLAKAPEESEYLNLIADAARALQ
SDAGQLVGGHYEVSGHTIRLRNAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRTL
LAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVDA
ESVSQWCRWVTLTARHNHLPAPGADAWPVLIREAARYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQRE
WREGFLAERMQDEILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKG
MMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNEK
IEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERI
AQASQQEGRHRFPWPLRWLNWFIPN

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=586, Percent_Identity=98.8054607508532, Blast_Score=1189, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.-

Molecular weight: Translated: 65719; Mature: 65588

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFML
CCCCHHHHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
AKAPEESEYLNLIADAARALQSDAGQLVGGHYEVSGHTIRLRNAVSADDNFATLTQVVAA
EECCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCEEEEECCCCCCCCHHHHHHHHHH
DWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRTLLAQPLLWMRLKNIVNRERF
HHHHHHHHHHHHHHHCCCEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCHHHC
DWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVD
CEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
AESVSQWCRWVTLTARHNHLPAPGADAWPVLIREAARYTGEQETLPLSPQWILRQCKEVA
HHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SLCDGDTFSGEQLNLMLQQREWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEF
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEEEC
PGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIP
CCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCC
FSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
CCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCCHH
KIEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLL
HHHHHHHHHHHHHCCCCCCEEEECCCCEEHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH
LNLVWDGEGQTTLMQTIQERIAQASQQEGRHRFPWPLRWLNWFIPN
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
TITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQFALEQLLHTRASSSFML
CCCHHHHHHCCCCCCHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
AKAPEESEYLNLIADAARALQSDAGQLVGGHYEVSGHTIRLRNAVSADDNFATLTQVVAA
EECCCHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCEEEEECCCCCCCCHHHHHHHHHH
DWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRTLLAQPLLWMRLKNIVNRERF
HHHHHHHHHHHHHHHCCCEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCHHHC
DWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFEDTLQIVD
CEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
AESVSQWCRWVTLTARHNHLPAPGADAWPVLIREAARYTGEQETLPLSPQWILRQCKEVA
HHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SLCDGDTFSGEQLNLMLQQREWREGFLAERMQDEILQEQILIETEGERIGQINALSVIEF
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEEEC
PGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIP
CCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCC
FSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
CCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCCHH
KIEGFFAICQQRELTGKQGVIIPTANVRHLSLHSELVKAVEEGKFTIWAVDDVTDALPLL
HHHHHHHHHHHHHCCCCCCEEEECCCCEEHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH
LNLVWDGEGQTTLMQTIQERIAQASQQEGRHRFPWPLRWLNWFIPN
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]