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The map label for this gene is yccF

Identifier: 218700519

GI number: 218700519

Start: 2230160

End: 2230606

Strand: Direct

Name: yccF

Synonym: ECIAI39_2185

Alternate gene names: 218700519

Gene position: 2230160-2230606 (Clockwise)

Preceding gene: 218700517

Following gene: 218700520

Centisome position: 43.46

GC content: 48.55

Gene sequence:

>447_bases
ATGCGTACCGTTTTGAACATTCTGAACTTTGTGCTTGGCGGATTTGCCACCACTCTGGGCTGGCTGTTGGCGACTCTGGT
CAGTATTGTGCTGATTTTTACCTTACCGCTGACACGATCCTGCTGGGAGATCACTAAACTGTCTCTGGTGCCTTATGGCA
ATGAAGCTATTCATGTCGATGAACTGAACCCGGCTGGCAAAAATGTGCTGCTAAATACTGGCGGTACGGTATTGAATATT
TTCTGGCTGATTTTCTTTGGCTGGTGGTTATGCCTGATGCACATTGCAACGGGCATCGCACAATGTATTTCCATCATTGG
CATTCCTGTCGGCATTGCGAACTTTAAAATTGCCGCTATTGCACTATGGCCGGTCGGTCGTCGCGTGGTATCGGTAGAAA
CAGCGCAAGCTGCGCGTGAAGCCAATGCACGTCGTCGTTTTGAATAA

Upstream 100 bases:

>100_bases
TGATTTCTTATCAGTGTAACCGTCAGAGAAAACGTGCTCCAGCCCAAAAAAACGTTACAATTGCCGCCCATTACTGAAAA
CCACAGTAAAGCGAGGTTTT

Downstream 100 bases:

>100_bases
TCCACTAATATGGCCTTTATGCTAAGTCCTTTGCTCAAACGCTATACCTGGAACAGCGCCTGGCTGTATTACGCGCGTAT
TTTTATTGCGCTTTGTGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNI
FWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE

Sequences:

>Translated_148_residues
MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNI
FWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE
>Mature_148_residues
MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNI
FWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE

Specific function: Unknown

COG id: COG3304

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787195, Length=148, Percent_Identity=100, Blast_Score=293, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCCF_ECOLI (P0AB12)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- EMBL:   J04726
- PIR:   H64836
- RefSeq:   AP_001591.1
- RefSeq:   NP_415481.1
- ProteinModelPortal:   P0AB12
- STRING:   P0AB12
- EnsemblBacteria:   EBESCT00000000648
- EnsemblBacteria:   EBESCT00000016804
- GeneID:   945594
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0944
- KEGG:   eco:b0961
- EchoBASE:   EB2212
- EcoGene:   EG12306
- eggNOG:   COG3304
- GeneTree:   EBGT00050000011084
- HOGENOM:   HBG675866
- OMA:   CLTIIGI
- ProtClustDB:   PRK11770
- BioCyc:   EcoCyc:G6496-MONOMER
- Genevestigator:   P0AB12
- InterPro:   IPR005185
- PIRSF:   PIRSF028777

Pfam domain/function: PF03733 DUF307

EC number: NA

Molecular weight: Translated: 16276; Mature: 16276

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2289b080)-; HASH(0x231f61cc)-; HASH(0x23249de8)-;

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCCEEEEE
ELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAI
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEE
ALWPVGRRVVSVETAQAAREANARRRFE
EECCCCCHHEEHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEITKLSLVPYGNEAIHVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCCEEEEE
ELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQCISIIGIPVGIANFKIAAI
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEE
ALWPVGRRVVSVETAQAAREANARRRFE
EECCCCCHHEEHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2542273; 7984428