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The map label for this gene is ydfK

Identifier: 218700198

GI number: 218700198

Start: 1930399

End: 1930665

Strand: Direct

Name: ydfK

Synonym: ECIAI39_1847

Alternate gene names: 218700198

Gene position: 1930399-1930665 (Clockwise)

Preceding gene: 218700195

Following gene: 218700225

Centisome position: 37.61

GC content: 33.33

Gene sequence:

>267_bases
ATGAAAATCAATAATATTTTAAGGAATATATTCATGAAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGA
AGTCAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATT
ACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGAC
AACCAAAATTTAAATGGTAAAATGTAA

Upstream 100 bases:

>100_bases
TTAGTCATGCTCTAATAAAATTAGGGATTGGCATATCCAATAACCCAGACAAAACCGATGTATAAGTCAACATATCCTGA
ATCAGACATACAATATCGCA

Downstream 100 bases:

>100_bases
TATAATAAACTTACTTTTTTATCATTTTTCCACTTTAACAACATTTTGCTCCACTTTTCCACGACCAAACAACTTGAAAT
CTGGTTAAAATAACACGCAA

Product: putative DNA-binding transcriptional regulator; Qin prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MKINNILRNIFMKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKKSWLDNKELLQTAISVLKD
NQNLNGKM

Sequences:

>Translated_88_residues
MKINNILRNIFMKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKKSWLDNKELLQTAISVLKD
NQNLNGKM
>Mature_88_residues
MKINNILRNIFMKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKKSWLDNKELLQTAISVLKD
NQNLNGKM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ynaE

Homologues:

Organism=Escherichia coli, GI1787826, Length=88, Percent_Identity=100, Blast_Score=177, Evalue=2e-46,
Organism=Escherichia coli, GI1787639, Length=88, Percent_Identity=98.8636363636364, Blast_Score=174, Evalue=7e-46,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YDFK_ECOLI (P76154)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C64909
- RefSeq:   AP_002165.1
- RefSeq:   NP_416062.1
- ProteinModelPortal:   P76154
- STRING:   P76154
- EnsemblBacteria:   EBESCT00000003782
- EnsemblBacteria:   EBESCT00000016706
- GeneID:   947451
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1537
- KEGG:   eco:b1544
- EchoBASE:   EB3584
- EcoGene:   EG13823
- eggNOG:   NOG135411
- GeneTree:   EBGT00050000011972
- HOGENOM:   HBG469602
- OMA:   RDNQRIN
- ProtClustDB:   CLSK891743
- BioCyc:   EcoCyc:G6818-MONOMER
- Genevestigator:   P76154

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10136; Mature: 10136

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINNILRNIFMKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIK
CCHHHHHHHHHHCCCCCHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
KKSWLDNKELLQTAISVLKDNQNLNGKM
CHHCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKINNILRNIFMKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIK
CCHHHHHHHHHHCCCCCHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
KKSWLDNKELLQTAISVLKDNQNLNGKM
CHHCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503