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The map label for this gene is ydcF

Identifier: 218700088

GI number: 218700088

Start: 1804268

End: 1804972

Strand: Direct

Name: ydcF

Synonym: ECIAI39_1719

Alternate gene names: 218700088

Gene position: 1804268-1804972 (Clockwise)

Preceding gene: 218700087

Following gene: 218700089

Centisome position: 35.16

GC content: 51.91

Gene sequence:

>705_bases
GTGCCGTATCAGGCCGATTGCGTGATCCTTGCAGGCAATGCGGTTATGCCGACTATCGATGCGGCATGTAAGATTGCCCG
CGATCAGCAAATTCCTTTACTGATTAGTGGTGGTATCGGTCACTCGACAACTTTTTTGTATAGCGCCATCGCACAGCATC
CGCACTACAACACTATCCGCACCACTGGCAGAGCAGAAGCTACCATTCTGGCGGATATCGCTCATCAGTTCTGGCACATT
CCGCATGAAAAAATCTGGATTGAAGACCAGTCAACAAACTGCGGTGAAAACGCACGCTTTAGCATCGCGCTATTGAATCA
GGCCGTAGAACGAGTTCACACAGCTATCGTTGTTCAGGACCCCACCATGCAGCGGCGCACGATGGCGACGTTCCGCCGTA
TGACCGGGGACAATCCCGATGCACCACGCTGGTTAAGTTATCCCGGATTCGTTCCTCAGTTAGGAAATAACGCAGACAGT
GTAATCTTTGTTAATCCGTTGCAAGGATTATGGCCGGTTGAGCGTTATCTATCGCTACTCACTGGCGAGCTGCCGCGTTT
ACGCGATGATAGCGATGGCTACGGCCCCCGCGGGCGAGATTTTATCGTTCACGTTGATTTTCCGGCAGAAGTCATCCAGG
CATGGCAAACGCTGAAACACGATGCAGTGCTCATCGAGGCGATCGAAAGTCGCTCGTTACGTTAA

Upstream 100 bases:

>100_bases
AACCATAAACATTACCCCGTTTCCGACGCTTTCGCCGGCAACCATAGATGCCATAAATGTTATCGGACAGTGGCTGGCGC
AGGATGATTTCTCCGGTGAG

Downstream 100 bases:

>100_bases
AAATTGCCCGTTTGTGAACCACTTGTTTACAAACGGGCATAACTCCTGCCTTTTATTTCTGCCTCTTATTCCTTTTACAC
TTGTTTTTATGAAGCCCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHI
PHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNNADS
VIFVNPLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFPAEVIQAWQTLKHDAVLIEAIESRSLR

Sequences:

>Translated_234_residues
MPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHI
PHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNNADS
VIFVNPLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFPAEVIQAWQTLKHDAVLIEAIESRSLR
>Mature_233_residues
PYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIP
HEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSV
IFVNPLQGLWPVERYLSLLTGELPRLRDDSDGYGPRGRDFIVHVDFPAEVIQAWQTLKHDAVLIEAIESRSLR

Specific function: Binds S-adenosyl-L-methionine (AdoMet) [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO4629 [H]

Homologues:

Organism=Escherichia coli, GI1787683, Length=234, Percent_Identity=97.8632478632479, Blast_Score=478, Evalue=1e-136,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 26221; Mature: 26090

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIR
CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEE
TTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQD
CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHEEEEEC
PTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFVNPLQGLWPVERYLSLL
CCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
TGELPRLRDDSDGYGPRGRDFIVHVDFPAEVIQAWQTLKHDAVLIEAIESRSLR
HCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
PYQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIR
CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEE
TTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQD
CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHEEEEEC
PTMQRRTMATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFVNPLQGLWPVERYLSLL
CCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
TGELPRLRDDSDGYGPRGRDFIVHVDFPAEVIQAWQTLKHDAVLIEAIESRSLR
HCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10493123 [H]