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The map label for this gene is ydbJ

Identifier: 218700068

GI number: 218700068

Start: 1775880

End: 1776146

Strand: Direct

Name: ydbJ

Synonym: ECIAI39_1699

Alternate gene names: 218700068

Gene position: 1775880-1776146 (Clockwise)

Preceding gene: 218700063

Following gene: 218700070

Centisome position: 34.6

GC content: 54.31

Gene sequence:

>267_bases
ATGCGAGCAGCGTTTTGGGTAGGGTGTGCCGCTTTATTATTGTCGGCGTGTAGTAGTGAACCTGTTCAGCAGGCGACTGC
GGCGCACGTAGCGCCAGGTTTAAAAGCGTCGATGTCCAGTAGTGGAGAAGCAAATTGTGCAATGATCGGCGGTTCGCTTT
CTGTTGCCCGTCAACTGGATGGTACGGCGATTGGGATGTGTGCATTACCCAACGGCAAACGCTGTAGCGAACAGTCACTT
GCCGCCGGGAGCTGTGGCAGCTATTAA

Upstream 100 bases:

>100_bases
AAAATGCGGGGCAACGCGCAGGACAGCTCTCGACGCCGCCCTCTGTGCTGCCTATTATTTATGGCGGTGTCGTTTGGCTT
GAAGATCAGAGGAAGAAAAG

Downstream 100 bases:

>100_bases
TTCATTAAATCCGCCAGCTTATAAGTTAATGTCTGTTTCGCGGTCGCCAGCGTTAACTGGTTCGCGGTCAGATCCACTTG
TGCACCTTCTTTCAGCATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSL
AAGSCGSY

Sequences:

>Translated_88_residues
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSL
AAGSCGSY
>Mature_88_residues
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSL
AAGSCGSY

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=88, Percent_Identity=100, Blast_Score=174, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDBJ_ECOL6 (P0ACW3)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_753727.1
- ProteinModelPortal:   P0ACW3
- EnsemblBacteria:   EBESCT00000044932
- GeneID:   1035628
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c1825
- GeneTree:   EBGT00050000011237
- HOGENOM:   HBG756869
- OMA:   SAIGMCA
- ProtClustDB:   CLSK894102
- InterPro:   IPR005590

Pfam domain/function: PF03891 DUF333

EC number: NA

Molecular weight: Translated: 8696; Mature: 8696

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
11.4 %Cys+Met (Translated Protein)
6.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
11.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLD
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHCC
GTAIGMCALPNGKRCSEQSLAAGSCGSY
CCEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEANCAMIGGSLSVARQLD
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHCC
GTAIGMCALPNGKRCSEQSLAAGSCGSY
CCEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157