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The map label for this gene is yciM

Identifier: 218699992

GI number: 218699992

Start: 1691478

End: 1692647

Strand: Direct

Name: yciM

Synonym: ECIAI39_1621

Alternate gene names: 218699992

Gene position: 1691478-1692647 (Clockwise)

Preceding gene: 218699991

Following gene: 218699993

Centisome position: 32.96

GC content: 51.71

Gene sequence:

>1170_bases
ATGCTGGAGTTGTTGTTTCTGCTTTTGCCTGTAGCCGCTGCCTATGGCTGGTATATGGGCCGCAGAAGTGCGCAACAAAA
CAAGCAAGATGAAGCCAACCGCTTGTCGCGTGATTACGTAGCGGGGGTTAACTTCCTGCTTAGTAATCAACAGGATAAAG
CGGTAGACCTGTTTCTCGATATGCTTAAAGAGGATACAGGTACCGTTGAAGCCCACCTTACGCTCGGAAACCTGTTCCGT
TCGCGTGGCGAAGTTGATCGCGCTATTCGCATCCATCAGACCCTAATGGAAAGCGCCTCGCTGACCTATGAACAGCGGCT
TTTGGCGATTCAACAACTGGGGCGTGATTACATGGCTGCCGGGTTATACGACCGCGCGGAAGACATGTTCAATCAGCTGA
CAGATGAAACTGACTTCCGCATTGGCGCGCTGCAACAGTTGCTACAAATCTACCAGGCTACCAGCGAGTGGCAGAAAGCA
ATTGATGTTGCCGAACGCCTGGTGAAGCTGGGTAAAGATAAACAGTGCGTCGAAATTGCCCATTTCTACTGTGAGTTAGC
TCTGCAGCATATGGCCAGCGACGATCTCGATCGTGCCATGACTTTGCTAAAAAAAGGTGCGGCGGCAGATAAAAACAGCG
CCCGCGTATCCATCATGATGGGACGCGTGTTTATGGCGAAAGGAGAATACGCCAAAGCCGTCGAAAGTTTGCAACGTGTC
ATATCCCAGGACAGAGAACTGGTCAGCGAAACGCTGGAAATGCTGCAAACATGCTATCAGCAGTTGGGTAAAACTGCCGA
ATGGGCAGAATTCCTGCAGCGCGCGGTGGAAGAGAACACCGGTGCCGATGCTGAACTGATGCTTGCGGACATCATCGAAG
CGCGCGACGGTAGTGAGGCCGCACAGGTCTATATTACGCGTCAGCTTCAGCGTCATCCGACCATGCGTGTGTTCCATAAG
CTAATGGATTACCACTTAAATGAAGCGGAAGAAGGGCGTGCCAAAGAGAGTCTGATGGTGCTGCGTGACATGGTTGGCGA
GAAGGTGCGGAGTAAGCCTCGTTATCGCTGCCAGAAATGTGGTTTTACCGCATACACTCTCTACTGGCATTGTCCGTCTT
GTCGGGCTTGGTCAACCATTAAACCGATTCGCGGTCTTGATGGCCTGTAA

Upstream 100 bases:

>100_bases
GCGCGCTGAACGTAAAATAAAGCGACTGGAAAACCAGCTTTCACCCGCGACTGACGTGGCTGTAGTGCCGCACTCGTCAG
CGGCGAAGGAATAACTTTCT

Downstream 100 bases:

>100_bases
TTTTTAAAAAAATCCGACTTTAGTTACAACATACTAATTATTGATGTTCCATTGTGCTCCGGTAACTCAGGCGCAGAAAA
GCCTGCCAGGGGAGAAATCG

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
IDVAERLVKLGKDKQCVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL

Sequences:

>Translated_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
IDVAERLVKLGKDKQCVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL
>Mature_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFR
SRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
IDVAERLVKLGKDKQCVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHK
LMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=389, Percent_Identity=99.7429305912596, Blast_Score=799, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44479; Mature: 44479

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAA
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
GLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQCVEIA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHH
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKC
HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGL
CCEEEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
MLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAA
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
GLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQCVEIA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRV
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHH
ISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
AQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEKVRSKPRYRCQKC
HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
GFTAYTLYWHCPSCRAWSTIKPIRGLDGL
CCEEEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]