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The map label for this gene is rsxC

Identifier: 218699803

GI number: 218699803

Start: 1498103

End: 1500325

Strand: Reverse

Name: rsxC

Synonym: ECIAI39_1427

Alternate gene names: 218699803

Gene position: 1500325-1498103 (Counterclockwise)

Preceding gene: 218699804

Following gene: 218699802

Centisome position: 29.23

GC content: 55.56

Gene sequence:

>2223_bases
ATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAAC
CCAGTCCAACGGTACGCCCCTGCGCCAGGTACCACTGGCGCAGCGTTTTGTCATACCACTGAAACAACATATTGGCGCTG
AAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTACTGCGCGGCCAGCCGCTTACCCGTGGACGCGGCAAAATGCTGCCG
GTTCACGCGCCCACCTCGGGTACCGTTACGGCTATTGCGCCCCACTCTACGGCTCATCCTTCAGCTTTAGCTGAATTAAG
CGTGATTATTGATGCCGATGGCGAAGACTGCTGGATCCCGCGCGACGGCTGGGACGATTATCGCTCTCGCAGTCGCGAAG
AGTTAATCGAGCGCATTCATAAGTTTGGTGTTGCCGGGCTGGGCGGTGCGGGATTCCCGACAGGCGTTAAATTGCAGGGT
GGCGGAGATAAGATTGAAACGTTGATTATCAACGCTGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCA
GGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTG
AAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTCACGATATTTCTCTGCGGGTGATTCCC
ACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATC
CGATATCGGCGTATTAATGCAAAACGTCGGCACCGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCG
AGCGTGTCGTGACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGTTGGGGACGCCAGTGCGTCAT
TTATTGAATGACGCCGGATTCTGCCCCTCTGCCGACCAAATGGTGATTATGGGCGGCCCGCTAATGGGCTTTACCTTGCC
GTGGCTGGATGTCCCTGTCGTAAAGATTACCAACTGTCTTTTGGCTCCCTCTGCCAATGAACTTGGCGAACCACAGGAAG
AACAAAGTTGCATCCGTTGTAGCGCCTGTGCTGACGCCTGCCCTGCGGATCTTTTGCCGCAACAGCTGTACTGGTTCAGC
AAAGGTCAGCAACACGATAAAGCCACCACGCATAACATTGCCGACTGCATTGAATGTGGAGCTTGCGCGTGGGTTTGCCC
GAGCAATATTCCCCTGGTGCAATATTTCCGCCAGGAAAAAGCTGAAATTGCGGCTATTCGTCAGGAAGAAAAGCGCGCCG
CAGAAGCCAAAGCGCGTTTCGAAGCGCGCCAGGCTCGTCTGGAGCGCGAAAAAGCGGCTCGCCTTGAACGACATAAGAGC
GCAGCCGTTCAACCTGCAGCCAAAGATAAAGATGCGATTGCTGCCGCTCTGGCGCGGGTGAAAGAGAAACAGGCCCAGGC
TACACAGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGCGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGC
AAGCCAGAGCGAAACAGGCAAAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGAA
GCCGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCG
CAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAACGCAGAGCCAGAAC
AACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCT
AATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACT
GGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCG
CCAAAGCGCGCAAGCTGGAACAGAAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCC
GCGGCTATTGCCCGCGTTCAGGCCAAAAAAGCCGCCCAGCAAAAGGTTGTAAACGAGGACTAA

Upstream 100 bases:

>100_bases
CCGACGCACTGCATCTCGTTGCAACCGGTTGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCG
TATCATTCCCGTGGAACACC

Downstream 100 bases:

>100_bases
ATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATTATGCTGTTGGTGTTGCTCGC
AGCCGTGCCAGGAATCGCAG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 740

Protein sequence:

>740_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWDDYRSRSREELIERIHKFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAKLQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQKQANAVPEEQVDPRKAAVA
AAIARVQAKKAAQQKVVNED

Sequences:

>Translated_740_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWDDYRSRSREELIERIHKFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAKLQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQKQANAVPEEQVDPRKAAVA
AAIARVQAKKAAQQKVVNED
>Mature_740_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWDDYRSRSREELIERIHKFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAKLQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQKQANAVPEEQVDPRKAAVA
AAIARVQAKKAAQQKVVNED

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=740, Percent_Identity=98.6486486486486, Blast_Score=1467, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 80240; Mature: 80240

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCEECC
RDGWDDYRSRSREELIERIHKFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHH
KLQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
RAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQKQANAVPEEQVDPRKAAVA
HHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHH
AAIARVQAKKAAQQKVVNED
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCEECC
RDGWDDYRSRSREELIERIHKFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHH
KLQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
RAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQKQANAVPEEQVDPRKAAVA
HHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHH
AAIARVQAKKAAQQKVVNED
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA