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The map label for this gene is slyB

Identifier: 218699790

GI number: 218699790

Start: 1486901

End: 1487368

Strand: Reverse

Name: slyB

Synonym: ECIAI39_1414

Alternate gene names: 218699790

Gene position: 1487368-1486901 (Counterclockwise)

Preceding gene: 218699796

Following gene: 218699788

Centisome position: 28.98

GC content: 51.5

Gene sequence:

>468_bases
ATGATTAAACGCGTATTGGTTGTTTCAATGGTAGGTCTGTCTCTTGTCGGTTGTGTTAATAACGACACCCTGTCAGGGGA
TGTTTATACCGCTTCTGAAGCGAAACAAGTACAGAATGTCAGCTATGGCACCATCGTTAACGTACGTCCGGTACAGATTC
AGGGCGGTGATGATTCCAACGTTATCGGTGCAATTGGCGGTGCTGTTCTTGGTGGTTTCCTGGGAAATACTGTTGGTGGC
GGAACCGGGCGTTCTCTGGCTACTGCAGCAGGCGCTGTTGCAGGTGGCGTAGCCGGTCAGGGCGTACAGAGTGCAATGAA
CAAAACGCAGGGTGTCGAGCTGGAAATTCGTAAAGACGATGGTAATACCATCATGGTGGTACAGAAACAAGGCAACACTC
GTTTCTCTCCGGGCCAACGTGTCGTACTGGCCAGCAATGGCAGTCAGGTGACCGTTTCCCCGCGCTAA

Upstream 100 bases:

>100_bases
CATATTTGGTAGAACATGTAACCATGGATTCACATATGCCATATACTTTGACCATGAGGGATGCTTGCGTGGCGTTTCAT
GGTGAACAGGAGATTTTTCA

Downstream 100 bases:

>100_bases
ATAAGTTTGCGTGTGGTCAGGTTACTGACCACACGCCCCCTTCATTTCACCCTTTGGCCTGTAACTCAATGATATTATGC
TCAAGTTTTGCGATGAGCTT

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGG
GTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR

Sequences:

>Translated_155_residues
MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGG
GTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR
>Mature_155_residues
MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGG
GTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR

Specific function: Unknown

COG id: COG3133

COG function: function code M; Outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pcp/slyB lipoprotein family

Homologues:

Organism=Escherichia coli, GI48994887, Length=155, Percent_Identity=100, Blast_Score=299, Evalue=7e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLYB_ECO57 (P0A906)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   B85771
- PIR:   F90922
- RefSeq:   NP_288077.1
- RefSeq:   NP_310377.1
- ProteinModelPortal:   P0A906
- EnsemblBacteria:   EBESCT00000028546
- EnsemblBacteria:   EBESCT00000057069
- GeneID:   912692
- GeneID:   961599
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2655
- KEGG:   ecs:ECs2350
- GeneTree:   EBGT00050000008864
- HOGENOM:   HBG531656
- OMA:   MRAYVQQ
- ProtClustDB:   CLSK880151
- BioCyc:   ECOL83334:ECS2350-MONOMER
- InterPro:   IPR008816

Pfam domain/function: PF05433 Rick_17kDa_Anti

EC number: NA

Molecular weight: Translated: 15602; Mature: 15602

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSN
CCHHHHHHHHHHHHEEEECCCCCCCCCEEECCHHHHHHCCCCCEEEEEEEEEEECCCCCC
VIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD
EEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECC
GNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR
CCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECC
>Mature Secondary Structure
MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGTIVNVRPVQIQGGDDSN
CCHHHHHHHHHHHHEEEECCCCCCCCCEEECCHHHHHHCCCCCEEEEEEEEEEECCCCCC
VIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD
EEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECC
GNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR
CCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796