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The map label for this gene is ydhO

Identifier: 218699777

GI number: 218699777

Start: 1471982

End: 1472809

Strand: Reverse

Name: ydhO

Synonym: ECIAI39_1401

Alternate gene names: 218699777

Gene position: 1472809-1471982 (Counterclockwise)

Preceding gene: 218699779

Following gene: 218699776

Centisome position: 28.7

GC content: 48.07

Gene sequence:

>828_bases
GTGGCGCGGATAAACCGTATTTCGATCACGCTCTGTGCTTTACTTTTTACCACCCTGCCTTTAACGCCTATGGCCCATGC
TTCAAAGCAAGCCAGGGAGAGTTCTGCTACCACTCATATCACCAAAAAAGCAGATAAAAAGAAAAGCACGGCAACCACCA
AAAAGACCCAGAAAGCCAGCCAGAAAACAGCGAAAAAAGCCGCCAGTAAAAGTACGATCAAAAGCAAAACCGCTTCTTCC
GTTAAAAAATCTTCCATTACCGCTTCTAAAAACGCCAAAACTCGCAGCAAACACGCCGTCAATAAAACGGCCTCAGCCAA
CTTTACCGAAAAGTGTACCAAACGTAAGGGCTATAAATCGCATTGTGTGAAAGTCAAAACTGCCGCGTCAGGAACCCTTG
CCGACGCGCACAAAGCGAAGGTGCAAAAAGCCACGAAAGTGGCAATGAATAAACTGATGCAGCAAATTGGTAAGCCATAT
CGTTGGGGCGGCAGCTCACCGCGTACCGGTTTTGATTGCAGCGGCCTGGTTTATTACGCTTATAAAGATTTGGTGAAAAT
TCGTATTCCGCGTACGGCGAATGAAATGTATCACCTGCGAGATGCAGCGCCAATCGAACGTAGTGAACTGAAAAACGGCG
ACCTGGTCTTTTTCCGTACTCAGGGACGCGGTACAGCCGATCATGTCGGCGTATATGTCGGCAACGGCAAATTTATTCAG
TCACCGCGTACGGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGCCG
GGTAATGACCCCAAAAACACTTCGCTAA

Upstream 100 bases:

>100_bases
ATAAAAGCTATTAACTTTCTCTTCTTCTATGCATTAGAATCATCAAGTTTTGTAAATCAGACGCAGGCATGATAGACCTG
CCTTAACAGAGGGACGCTCA

Downstream 100 bases:

>100_bases
AACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTCGTCTCACCTTTTAATTTGCTACCCTATCCATACGCAC
AATAAGGCTATTGTACGTAT

Product: putative exported hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKASQKTAKKAASKSTIKSKTASS
VKKSSITASKNAKTRSKHAVNKTASANFTEKCTKRKGYKSHCVKVKTAASGTLADAHKAKVQKATKVAMNKLMQQIGKPY
RWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQ
SPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

Sequences:

>Translated_275_residues
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKASQKTAKKAASKSTIKSKTASS
VKKSSITASKNAKTRSKHAVNKTASANFTEKCTKRKGYKSHCVKVKTAASGTLADAHKAKVQKATKVAMNKLMQQIGKPY
RWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQ
SPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR
>Mature_274_residues
ARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKASQKTAKKAASKSTIKSKTASSV
KKSSITASKNAKTRSKHAVNKTASANFTEKCTKRKGYKSHCVKVKTAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYR
WGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQS
PRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=275, Percent_Identity=96.3636363636364, Blast_Score=509, Evalue=1e-145,
Organism=Escherichia coli, GI1786421, Length=134, Percent_Identity=52.9850746268657, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1788501, Length=122, Percent_Identity=36.0655737704918, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=36.1344537815126, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30357; Mature: 30226

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKAS
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKTAKKAASKSTIKSKTASSVKKSSITASKNAKTRSKHAVNKTASANFTEKCTKRKGYKS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCHH
HCVKVKTAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYA
HEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHH
YKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQ
HHHHHEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEEEECCCEEEE
SPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR
CCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC
>Mature Secondary Structure 
ARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKAS
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKTAKKAASKSTIKSKTASSVKKSSITASKNAKTRSKHAVNKTASANFTEKCTKRKGYKS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCHH
HCVKVKTAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYA
HEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHH
YKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQ
HHHHHEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEEEECCCEEEE
SPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR
CCCCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]