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The map label for this gene is ydfF [H]

Identifier: 218698046

GI number: 218698046

Start: 4972686

End: 4973372

Strand: Direct

Name: ydfF [H]

Synonym: EC55989_4856

Alternate gene names: 218698046

Gene position: 4972686-4973372 (Clockwise)

Preceding gene: 218698045

Following gene: 218698048

Centisome position: 96.47

GC content: 41.63

Gene sequence:

>687_bases
ATGGCTAATTTAATACGAAAAGAGGTTACCTTTGAGTCCTCAATAGCCGCGATAGGGGCGGCTATGTCTGACATTTCACG
AGTTAAAATACTCAGTGCTTTGATGGATGGGCGAGCTTGGACGGCCACTGAGCTAAGTTCTGTGGCGAATATATCAGCTT
CAACGGCGAGCAGTCATTTATCTAAATTATTAGATTGCCAGCTAATCACAGTAGTAGCTCAAGGCAAGCATCGTTATTTT
CGGCTAGCAGGAAAAGATATTGCTGAATTGATGGAAAGTATGATGGGGATCTCCTTAAACCATGGCGTACATGCCAAAGT
TTCCACGCCAGTGCATTTACGAAAAGCACGTACTTGCTATGATCATTTAGCTGGCGAAGTTGCCGTTAAGATCTATGATT
CCCTTTGTCAACAGCAATGGATCACTGAAAATGGTTCAATGATCACATTAAGTGGTATTCAATATTTTCATGAAATGGGA
ATTGACGTTCCTTCCAAACATTCACGTAAAATCTGTTGTGCGTGTTTAGATTGGAGTGAACGCCGTTTCCATTTAGGTGG
GTACGTTGGAGCCGCATTATTTTCGCTTTATGAATCTAAAGGGTGGTTAACTCGACATCTTGGTTACCGTGAAGTTACCA
TCACGGAAAAAGGTTATGCTGCTTTTAAGACCCACTTTCACATTTAA

Upstream 100 bases:

>100_bases
GTGCAATACAGTGACCATGCTAACCAACTGATATTAATAACGGACAATGATAGTATGGCTGCATCTGTTACGCTCCCTTG
GGCAATAAAGTGAACTTGCG

Downstream 100 bases:

>100_bases
GTTGTTTTTCTAATCCGCATATGATCAATTCAAGGCCGAATAAGAAGGCTGGCTCTGCACCTTGGTGATCAAATAATTCG
ATAGCTTGTCGTAATAATGG

Product: ArsR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MANLIRKEVTFESSIAAIGAAMSDISRVKILSALMDGRAWTATELSSVANISASTASSHLSKLLDCQLITVVAQGKHRYF
RLAGKDIAELMESMMGISLNHGVHAKVSTPVHLRKARTCYDHLAGEVAVKIYDSLCQQQWITENGSMITLSGIQYFHEMG
IDVPSKHSRKICCACLDWSERRFHLGGYVGAALFSLYESKGWLTRHLGYREVTITEKGYAAFKTHFHI

Sequences:

>Translated_228_residues
MANLIRKEVTFESSIAAIGAAMSDISRVKILSALMDGRAWTATELSSVANISASTASSHLSKLLDCQLITVVAQGKHRYF
RLAGKDIAELMESMMGISLNHGVHAKVSTPVHLRKARTCYDHLAGEVAVKIYDSLCQQQWITENGSMITLSGIQYFHEMG
IDVPSKHSRKICCACLDWSERRFHLGGYVGAALFSLYESKGWLTRHLGYREVTITEKGYAAFKTHFHI
>Mature_227_residues
ANLIRKEVTFESSIAAIGAAMSDISRVKILSALMDGRAWTATELSSVANISASTASSHLSKLLDCQLITVVAQGKHRYFR
LAGKDIAELMESMMGISLNHGVHAKVSTPVHLRKARTCYDHLAGEVAVKIYDSLCQQQWITENGSMITLSGIQYFHEMGI
DVPSKHSRKICCACLDWSERRFHLGGYVGAALFSLYESKGWLTRHLGYREVTITEKGYAAFKTHFHI

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 25297; Mature: 25165

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLIRKEVTFESSIAAIGAAMSDISRVKILSALMDGRAWTATELSSVANISASTASSHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
SKLLDCQLITVVAQGKHRYFRLAGKDIAELMESMMGISLNHGVHAKVSTPVHLRKARTCY
HHHHHHHHHEEECCCCCCEEEECCHHHHHHHHHHHCEECCCCEEEEECCCHHHHHHHHHH
DHLAGEVAVKIYDSLCQQQWITENGSMITLSGIQYFHEMGIDVPSKHSRKICCACLDWSE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
RRFHLGGYVGAALFSLYESKGWLTRHLGYREVTITEKGYAAFKTHFHI
CEEECHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCEEHHEECCC
>Mature Secondary Structure 
ANLIRKEVTFESSIAAIGAAMSDISRVKILSALMDGRAWTATELSSVANISASTASSHL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
SKLLDCQLITVVAQGKHRYFRLAGKDIAELMESMMGISLNHGVHAKVSTPVHLRKARTCY
HHHHHHHHHEEECCCCCCEEEECCHHHHHHHHHHHCEECCCCEEEEECCCHHHHHHHHHH
DHLAGEVAVKIYDSLCQQQWITENGSMITLSGIQYFHEMGIDVPSKHSRKICCACLDWSE
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
RRFHLGGYVGAALFSLYESKGWLTRHLGYREVTITEKGYAAFKTHFHI
CEEECHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCEEHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]