Click here to switch to the map view.

The map label for this gene is yjfC

Identifier: 218697936

GI number: 218697936

Start: 4858595

End: 4859758

Strand: Direct

Name: yjfC

Synonym: EC55989_4743

Alternate gene names: 218697936

Gene position: 4858595-4859758 (Clockwise)

Preceding gene: 218697935

Following gene: 218697937

Centisome position: 94.25

GC content: 53.26

Gene sequence:

>1164_bases
ATGCTGAGACACAACGTTCCTGTGCGACGGGATCTGGACCAGATCGCCGCTAACAACGGTTTCGACTTTCATATCATCGA
CAATGAAATCTATTGGGACGAGAGTGGGGCTTACCGTTTTACTCTGCGCCAGATTGAAGAGCAGATCGAAAAACCGACTG
CGGAACTGCATCAGATGTGCCTTGAGGTGGTGGATCGCGCGGTTAAAGACGAAGAGATCCTGACGCAACTGGCGATCCCG
CCGTTGTACTGGGATGTGATCGCCGAAAGCTGGCGCGCACGCGATCCTTCGCTGTATGGCCGGATGGATTTTGCCTGGTG
TGGCAATGCGCCGGTGAAGCTGCTGGAGTACAACGCCGATACGCCGACCTCGTTGTATGAGTCGGCTTATTTCCAGTGGT
TGTGGCTGGAGGATGCCCGGCGCAGCGGCATTATTCCGCGTGATGCCGATCAGTACAATGCCATTCAGGAACGCCTGATT
TCACGCTTTAGCGAGCTTTATAGCCGGGAGCCGTTTTATTTCTGCTGCTGTCAGGACACCGATGAAGACAGGACTACCGT
GCTGTACTTGCAGGACTGCGCTCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCG
GCGGTGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGTGAC
GATAACGGTCCGCTGCTGTGCAAGCGTCGCGAGCAATGGGTGGAGCCGTTATGGAAAAGTATCTTGAGTAATAAAGGGCT
AATGCCGCTGCTTTGGCGCTTCTTCCCTGGTCATCCTAACCTTCTTGCATCCTGGTTTGAGGGTGAAAAATCGCAGATTG
CCGCTGGCGAAAGCTATGTGCGTAAACCGATCTACTCGCGCGAAGGCGGAAACGTCACCATTTTCGACGGTCAGAATAAC
GTCGTTGACCACGCTGATGGTGATTACGCCGATGAACCGATGATCTACCAGGCGTTTCAACCTCTGCCGCGATTTGGCGA
TAGCTACACACTCATCGGTAGCTGGATTGTCGATGATGAAGCGTGCGGAATGGGGATCCGTGAAGATAACACGCTGATCA
CCAAAGACACCTCTCGTTTCGTTCCGCATTACATTGCTGGCTAA

Upstream 100 bases:

>100_bases
CTTACTCTTCAGGCGGCTTTACCACCAAAAAAGCGTCAACCGTTTCGCGCGGCGGCTATGGTCGTTCTTCCAGCGCCCGT
GGGCATTGGGGAGGCTAATC

Downstream 100 bases:

>100_bases
GAATGTTTTAGCAATCTCTTTCTGTCAGGAATCCATGGCAGTGACCATACTAATGGTGACTGCCATTGATGGAGGGAGAC
ACAGTGCACTGGCAAACTCA

Product: putative synthetase/amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESGAYRFTLRQIEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIP
PLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNADTPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLI
SRFSELYSREPFYFCCCQDTDEDRTTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRD
DNGPLLCKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYVRKPIYSREGGNVTIFDGQNN
VVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIREDNTLITKDTSRFVPHYIAG

Sequences:

>Translated_387_residues
MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESGAYRFTLRQIEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIP
PLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNADTPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLI
SRFSELYSREPFYFCCCQDTDEDRTTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRD
DNGPLLCKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYVRKPIYSREGGNVTIFDGQNN
VVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIREDNTLITKDTSRFVPHYIAG
>Mature_387_residues
MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESGAYRFTLRQIEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIP
PLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNADTPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLI
SRFSELYSREPFYFCCCQDTDEDRTTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRD
DNGPLLCKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYVRKPIYSREGGNVTIFDGQNN
VVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIREDNTLITKDTSRFVPHYIAG

Specific function: Unknown

COG id: COG0754

COG function: function code E; Glutathionylspermidine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of E.coli gsp and to E.coli ygiC [H]

Homologues:

Organism=Escherichia coli, GI1790629, Length=387, Percent_Identity=98.1912144702842, Blast_Score=788, Evalue=0.0,
Organism=Escherichia coli, GI1789416, Length=387, Percent_Identity=50.6459948320413, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI1789361, Length=374, Percent_Identity=27.807486631016, Blast_Score=125, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005494
- InterPro:   IPR016185 [H]

Pfam domain/function: PF03738 GSP_synth [H]

EC number: NA

Molecular weight: Translated: 44885; Mature: 44885

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESGAYRFTLRQIEEQIEKPTAELHQMC
CCCCCCCHHHHHHHHHCCCCCEEEEECCEEEECCCCCEEHHHHHHHHHHHCHHHHHHHHH
LEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNAD
HHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCC
TPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLISRFSELYSREPFYFCCCQDT
CCHHHHHHHHEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
DEDRTTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRD
CCCCEEEEEHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCEEEEEEC
DNGPLLCKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYV
CCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHCCHHHH
RKPIYSREGGNVTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDE
HCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCH
ACGMGIREDNTLITKDTSRFVPHYIAG
HHCCCCCCCCEEEECCHHHHCCHHHCC
>Mature Secondary Structure
MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESGAYRFTLRQIEEQIEKPTAELHQMC
CCCCCCCHHHHHHHHHCCCCCEEEEECCEEEECCCCCEEHHHHHHHHHHHCHHHHHHHHH
LEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNAD
HHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCC
TPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLISRFSELYSREPFYFCCCQDT
CCHHHHHHHHEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
DEDRTTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRD
CCCCEEEEEHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHCCEEEEEEC
DNGPLLCKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYV
CCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHCCHHHH
RKPIYSREGGNVTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDE
HCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCH
ACGMGIREDNTLITKDTSRFVPHYIAG
HHCCCCCCCCEEEECCHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7961409 [H]