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The map label for this gene is lpfD

Identifier: 218697260

GI number: 218697260

Start: 4077543

End: 4078598

Strand: Reverse

Name: lpfD

Synonym: EC55989_3999

Alternate gene names: 218697260

Gene position: 4078598-4077543 (Counterclockwise)

Preceding gene: 218697261

Following gene: 218697259

Centisome position: 79.12

GC content: 42.05

Gene sequence:

>1056_bases
ATGAAAATTAAAAATTTGTTGGCAGGTATGGTGCTGTTAGGGACGAGCACTTTTGCTGGAAATATATGGGCTGCGGATTG
GGGACCATGTCAGACATCAAATGGGGTGGCCCATGAGTATAGTTTTGATTTCGTACAGACTATCCAGGTACCTTCAGAAA
ATAAGGCTGGGAAAATATTAACTCAGCCCTTTGCTTTAGGTACAAAATATTCCGCTTATTGTGAATGCCCGGATCCCATT
CCAGATAATGGAGTTGTGACTTATTTTAAAGGTGTAACGCTTCTGCCTGAGCCTGGAACTGTAGATGGGTACTATAAATT
CAATAATTACATTGATATTCTCACCAAAATATATGTCTACACACAATTAGATATCCCGGTGCCTTTTACCGATCGAAGCA
ATGGCACGGCACAGAAAGAATGTACGCCCTATACTGCTAACAATTGGGGGACAGGTGGTAAAGGAAGTATCAGTATTTAT
ATTTCACATCCTTTTGTTGGGCAAATGATTATTCCTAAAACACGAGTTGCGTCCCTCTTTGGGACAAAAAAGAAAGGTGT
TTACAATGATAGTCAGCCCATGGCCAATGTCAGTATTTCCGGGAGTATTACAGTTACTCAAGGCTGTGAACTTGCCGCTG
GCACCGTACTGGATATTCCATTCGGAGAATATCAGGCCCATGATTTTAAAGGGCGTGCCGGACAACCACCACAAAATGTT
CAGAAGGTACAAAAAGAATTAAGCTTTGACTGCAATAATATTTCAGATGGCGTCAAAATTTATCTCAGTATTGATGCAAC
ACCAAATACTGCCTATCCCAGCGCAATTGATTTAGGCAACGCCGATGTTGGTGCAGTCATTGAGGACGGTAAAGGTAATA
TTCTTAAGCCGAATGACAGTAATAGCTTATTAGAAATGAACCCAGGCTCGCTGTATGAAGATGTCAAACGCAAAGCGACA
ACCACAATTACCGCTTATCCCGTTAGCACTACCGGAAAATTACCCGCTGCCGGGGATTATAGCGGTATTGCTACCATACA
TGTCGAACTGGAGTAA

Upstream 100 bases:

>100_bases
CAGGCGCAACGTTGCCGTGTGCCATTCCGCTTGCCAGAGAACAAGGACAATGCGGCTATCGTGATGGTTAATGCGGTATG
CGAGAAATAAGGATATTTAG

Downstream 100 bases:

>100_bases
CAGTCATGAAGCGAACAATACTTGCGTTATGCCTGCTGCCTCTTTCCTTTTCGTCATTCGCGGCAACCACGGATTTAGGG
CCGAAAGGAACATTGAAATT

Product: LpfD protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKIKNLLAGMVLLGTSTFAGNIWAADWGPCQTSNGVAHEYSFDFVQTIQVPSENKAGKILTQPFALGTKYSAYCECPDPI
PDNGVVTYFKGVTLLPEPGTVDGYYKFNNYIDILTKIYVYTQLDIPVPFTDRSNGTAQKECTPYTANNWGTGGKGSISIY
ISHPFVGQMIIPKTRVASLFGTKKKGVYNDSQPMANVSISGSITVTQGCELAAGTVLDIPFGEYQAHDFKGRAGQPPQNV
QKVQKELSFDCNNISDGVKIYLSIDATPNTAYPSAIDLGNADVGAVIEDGKGNILKPNDSNSLLEMNPGSLYEDVKRKAT
TTITAYPVSTTGKLPAAGDYSGIATIHVELE

Sequences:

>Translated_351_residues
MKIKNLLAGMVLLGTSTFAGNIWAADWGPCQTSNGVAHEYSFDFVQTIQVPSENKAGKILTQPFALGTKYSAYCECPDPI
PDNGVVTYFKGVTLLPEPGTVDGYYKFNNYIDILTKIYVYTQLDIPVPFTDRSNGTAQKECTPYTANNWGTGGKGSISIY
ISHPFVGQMIIPKTRVASLFGTKKKGVYNDSQPMANVSISGSITVTQGCELAAGTVLDIPFGEYQAHDFKGRAGQPPQNV
QKVQKELSFDCNNISDGVKIYLSIDATPNTAYPSAIDLGNADVGAVIEDGKGNILKPNDSNSLLEMNPGSLYEDVKRKAT
TTITAYPVSTTGKLPAAGDYSGIATIHVELE
>Mature_351_residues
MKIKNLLAGMVLLGTSTFAGNIWAADWGPCQTSNGVAHEYSFDFVQTIQVPSENKAGKILTQPFALGTKYSAYCECPDPI
PDNGVVTYFKGVTLLPEPGTVDGYYKFNNYIDILTKIYVYTQLDIPVPFTDRSNGTAQKECTPYTANNWGTGGKGSISIY
ISHPFVGQMIIPKTRVASLFGTKKKGVYNDSQPMANVSISGSITVTQGCELAAGTVLDIPFGEYQAHDFKGRAGQPPQNV
QKVQKELSFDCNNISDGVKIYLSIDATPNTAYPSAIDLGNADVGAVIEDGKGNILKPNDSNSLLEMNPGSLYEDVKRKAT
TTITAYPVSTTGKLPAAGDYSGIATIHVELE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787173, Length=260, Percent_Identity=27.6923076923077, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789534, Length=379, Percent_Identity=25.5936675461741, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693100, Length=332, Percent_Identity=26.5060240963855, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37715; Mature: 37715

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKNLLAGMVLLGTSTFAGNIWAADWGPCQTSNGVAHEYSFDFVQTIQVPSENKAGKIL
CCHHHHHHCCCEEECCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEE
TQPFALGTKYSAYCECPDPIPDNGVVTYFKGVTLLPEPGTVDGYYKFNNYIDILTKIYVY
ECCEECCCCCEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCEEEECHHHHHEEEEEEE
TQLDIPVPFTDRSNGTAQKECTPYTANNWGTGGKGSISIYISHPFVGQMIIPKTRVASLF
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHH
GTKKKGVYNDSQPMANVSISGSITVTQGCELAAGTVLDIPFGEYQAHDFKGRAGQPPQNV
CCCCCCCCCCCCCCEEEEECCEEEEECCCCEECCEEEECCCCCCCCCCCCCCCCCCHHHH
QKVQKELSFDCNNISDGVKIYLSIDATPNTAYPSAIDLGNADVGAVIEDGKGNILKPNDS
HHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCEECCCCC
NSLLEMNPGSLYEDVKRKATTTITAYPVSTTGKLPAAGDYSGIATIHVELE
CCEEEECCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MKIKNLLAGMVLLGTSTFAGNIWAADWGPCQTSNGVAHEYSFDFVQTIQVPSENKAGKIL
CCHHHHHHCCCEEECCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEE
TQPFALGTKYSAYCECPDPIPDNGVVTYFKGVTLLPEPGTVDGYYKFNNYIDILTKIYVY
ECCEECCCCCEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCEEEECHHHHHEEEEEEE
TQLDIPVPFTDRSNGTAQKECTPYTANNWGTGGKGSISIYISHPFVGQMIIPKTRVASLF
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHH
GTKKKGVYNDSQPMANVSISGSITVTQGCELAAGTVLDIPFGEYQAHDFKGRAGQPPQNV
CCCCCCCCCCCCCCEEEEECCEEEEECCCCEECCEEEECCCCCCCCCCCCCCCCCCHHHH
QKVQKELSFDCNNISDGVKIYLSIDATPNTAYPSAIDLGNADVGAVIEDGKGNILKPNDS
HHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCEECCCCC
NSLLEMNPGSLYEDVKRKATTTITAYPVSTTGKLPAAGDYSGIATIHVELE
CCEEEECCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]