Definition | Escherichia coli 55989, complete genome. |
---|---|
Accession | NC_011748 |
Length | 5,154,862 |
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The map label for this gene is tnsA [H]
Identifier: 218697197
GI number: 218697197
Start: 4000203
End: 4001045
Strand: Reverse
Name: tnsA [H]
Synonym: EC55989_3929
Alternate gene names: 218697197
Gene position: 4001045-4000203 (Counterclockwise)
Preceding gene: 218697198
Following gene: 218697196
Centisome position: 77.62
GC content: 40.09
Gene sequence:
>843_bases ATGGCTAGGGGTAGGCGTCTCAAATCCTATTTGGATTATGAAAATGCGCTAGGTGACGGCATAGGAGTGGGCTATGGCCA AAGTTATCAGCCCTGGCTTAGAGCTCAGGACGTTAAATCCCGTGGAAACCGTTCGATAGTCTTTGGCCTTAAGACGTTTC GAAACCATCATCTCCTTTCTTCTGTCGAAAGTAACTTTTTCTATCTGGCTGAGTTTAATGACTCGGTGATTGATATCCGG GAACAATTCCCACTCTTTCCTCTCCGGCTTACCCAACAAATAGCAAATCATCTACATTTTCAACATCCTATGGTGAGGGG AGTAAGAGGAGTACCTGTCGAAGTTCTGAATGTTATGACAACCGATTTTTTACTGACCTTGAGAACTCCTGAAGGCGGAC TTCGATACAAAGCTATAGCAGTAAAACATAACGAGAGCATACCTGAACGCGAAGCCCAAAAACTTGAAATAGAGAGGATG TTTTGGCAGTTGATTGATGTTGAGTTTCAAATTTATGTTGGCTCGGAACTCAATAACGTCGTCGGTAAAAACATTTGCTG GGCTACTTCTGTATTAAGAGATGGTTCTGAATTTTATGATAAATATCCTCTTGATAAAATCCTATGGAAGCTTAAACCAG ATGTTTATCCCATAGTAGGACTACGTGCAATGATTTCATCAATCTTTGGGGTAGATGCACAAGAAGCGATGATGTTATTG CAGGCAATGATTGGATTAAAAATGATAAATGTTGATTTATCATATCCAATACTCGAAACCGGTCTGATAAAGATAATTTC CAATGACCACTATATAGGACTGAACGCAAATGGATATTATTAG
Upstream 100 bases:
>100_bases CGACGCTAATGTTGTATACTTACTGAATGTGTGGTTATAGGGTTGGAGACTATAAAATGCACATATAGGTACGTATCAAT GTCGTTTTTAGGGTACGATC
Downstream 100 bases:
>100_bases GAATTCAGTCTGGCTCTCTCAAGGCACTGATTTGCTTGCAGAGGGACTTTACCGTGTTTTGGATTTTGACAGAAAGGTCG ATTTGTTAATTTTGTTTAAA
Product: Tn7-like transposase TnsA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MARGRRLKSYLDYENALGDGIGVGYGQSYQPWLRAQDVKSRGNRSIVFGLKTFRNHHLLSSVESNFFYLAEFNDSVIDIR EQFPLFPLRLTQQIANHLHFQHPMVRGVRGVPVEVLNVMTTDFLLTLRTPEGGLRYKAIAVKHNESIPEREAQKLEIERM FWQLIDVEFQIYVGSELNNVVGKNICWATSVLRDGSEFYDKYPLDKILWKLKPDVYPIVGLRAMISSIFGVDAQEAMMLL QAMIGLKMINVDLSYPILETGLIKIISNDHYIGLNANGYY
Sequences:
>Translated_280_residues MARGRRLKSYLDYENALGDGIGVGYGQSYQPWLRAQDVKSRGNRSIVFGLKTFRNHHLLSSVESNFFYLAEFNDSVIDIR EQFPLFPLRLTQQIANHLHFQHPMVRGVRGVPVEVLNVMTTDFLLTLRTPEGGLRYKAIAVKHNESIPEREAQKLEIERM FWQLIDVEFQIYVGSELNNVVGKNICWATSVLRDGSEFYDKYPLDKILWKLKPDVYPIVGLRAMISSIFGVDAQEAMMLL QAMIGLKMINVDLSYPILETGLIKIISNDHYIGLNANGYY >Mature_279_residues ARGRRLKSYLDYENALGDGIGVGYGQSYQPWLRAQDVKSRGNRSIVFGLKTFRNHHLLSSVESNFFYLAEFNDSVIDIRE QFPLFPLRLTQQIANHLHFQHPMVRGVRGVPVEVLNVMTTDFLLTLRTPEGGLRYKAIAVKHNESIPEREAQKLEIERMF WQLIDVEFQIYVGSELNNVVGKNICWATSVLRDGSEFYDKYPLDKILWKLKPDVYPIVGLRAMISSIFGVDAQEAMMLLQ AMIGLKMINVDLSYPILETGLIKIISNDHYIGLNANGYY
Specific function: Required for Tn7 transposition. Forms the transposase, together with TnsB. TnsA executes the 5'-DNA strand breakage reaction. TnsABC and tnsD promote high-frequency insertion of Tn7 into a specific target site known as ATT-Tn7 whereas tnsABC and tnsD prom
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011856 - InterPro: IPR011335 - InterPro: IPR014832 - InterPro: IPR014833 - InterPro: IPR011991 [H]
Pfam domain/function: PF08721 TnsA_C; PF08722 TnsA_N [H]
EC number: NA
Molecular weight: Translated: 32109; Mature: 31977
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARGRRLKSYLDYENALGDGIGVGYGQSYQPWLRAQDVKSRGNRSIVFGLKTFRNHHLLS CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHCCHHHHH SVESNFFYLAEFNDSVIDIREQFPLFPLRLTQQIANHLHFQHPMVRGVRGVPVEVLNVMT HHCCCEEEEEECCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHH TDFLLTLRTPEGGLRYKAIAVKHNESIPEREAQKLEIERMFWQLIDVEFQIYVGSELNNV HEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHH VGKNICWATSVLRDGSEFYDKYPLDKILWKLKPDVYPIVGLRAMISSIFGVDAQEAMMLL HCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH QAMIGLKMINVDLSYPILETGLIKIISNDHYIGLNANGYY HHHHCEEEEEEECCCCHHHHCEEEEECCCEEEEECCCCCC >Mature Secondary Structure ARGRRLKSYLDYENALGDGIGVGYGQSYQPWLRAQDVKSRGNRSIVFGLKTFRNHHLLS CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHCCHHHHH SVESNFFYLAEFNDSVIDIREQFPLFPLRLTQQIANHLHFQHPMVRGVRGVPVEVLNVMT HHCCCEEEEEECCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHH TDFLLTLRTPEGGLRYKAIAVKHNESIPEREAQKLEIERMFWQLIDVEFQIYVGSELNNV HEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHH VGKNICWATSVLRDGSEFYDKYPLDKILWKLKPDVYPIVGLRAMISSIFGVDAQEAMMLL HCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH QAMIGLKMINVDLSYPILETGLIKIISNDHYIGLNANGYY HHHHCEEEEEEECCCCHHHHCEEEEECCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2156235; 1655576; 3010949; 8947057; 10704304 [H]