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The map label for this gene is yrfA

Identifier: 218697072

GI number: 218697072

Start: 3855127

End: 3855531

Strand: Reverse

Name: yrfA

Synonym: EC55989_3797

Alternate gene names: 218697072

Gene position: 3855531-3855127 (Counterclockwise)

Preceding gene: 218697073

Following gene: 218697071

Centisome position: 74.79

GC content: 52.35

Gene sequence:

>405_bases
ATGAGGGTTAAACGCTGGTTGTTGGCAGGTATTGCATTGTGCCTTTTAACCGGTATGCGTGACCCTTTTAAACCGCCGGA
AGATCTATGCCGGATTAGCGAACTTAGCCAGTGGCGCTATCAGGGGATGGTAGGGCGAGGCGAGCGCATCATCGGTGTAA
TAAAAGACGGGCAAAAGAAATGGCGACGGGTGCAGCAAAACGATGTGCTGGAAAACGGCTGGACAATTTTACAGCTGACG
CCAGACGTACTAACGCTGGGTACCGGGACAAACTGCGAACCGCCACAATGGTTGTGGCAACGGCAAGGAGATACAAATGA
AGCAATGGATAGCCGCACTACTGTTGATGCTGATACCCGGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGATGGTG
GATGA

Upstream 100 bases:

>100_bases
GCATTTACACGGCTGGCAGAGCGCAACGTCAGCGTGAGCCGTTTTTCGTTAAGCGTGGAAGGTGATGATCTTTTGTTCAC
GCTACAACTGGAGACGCCGC

Downstream 100 bases:

>100_bases
CGTTCCGGTGGCTCAGGTGTTGCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTCGTGTCGCCAGACGTCAGCGGTA
CGGTGTCGTTACATCTAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLT
PDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG

Sequences:

>Translated_134_residues
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLT
PDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG
>Mature_134_residues
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLT
PDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTRRTGGKAAKSDADGG

Specific function: Required for the use of extracellular DNA as a nutrient

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082256, Length=134, Percent_Identity=100, Blast_Score=271, Evalue=9e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HOFP_ECOLI (P45750)

Other databases:

- EMBL:   U18997
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C65134
- RefSeq:   AP_004398.1
- RefSeq:   NP_417851.4
- STRING:   P45750
- EnsemblBacteria:   EBESCT00000003856
- EnsemblBacteria:   EBESCT00000017043
- GeneID:   947900
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5694
- KEGG:   eco:b3392
- EchoBASE:   EB2758
- EcoGene:   EG12922
- eggNOG:   NOG12805
- GeneTree:   EBGT00050000010055
- HOGENOM:   HBG472735
- OMA:   EGQMLEN
- ProtClustDB:   CLSK880643
- BioCyc:   EcoCyc:G7736-MONOMER
- Genevestigator:   P45750
- InterPro:   IPR019684

Pfam domain/function: PF10748 DUF2531

EC number: NA

Molecular weight: Translated: 15098; Mature: 15098

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKK
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
WRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTR
HHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCC
RTGGKAAKSDADGG
CCCCCCCCCCCCCC
>Mature Secondary Structure
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKK
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
WRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQGDTNEAMDSRTTVDADTR
HHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCC
RTGGKAAKSDADGG
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503