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The map label for this gene is yqhC

Identifier: 218696719

GI number: 218696719

Start: 3506583

End: 3507539

Strand: Reverse

Name: yqhC

Synonym: EC55989_3427

Alternate gene names: 218696719

Gene position: 3507539-3506583 (Counterclockwise)

Preceding gene: 218696724

Following gene: 218696716

Centisome position: 68.04

GC content: 50.47

Gene sequence:

>957_bases
ATGCTACAAAATTGCGCACAATCAAATTGCCGCATTATTCCTAAGAAATTACGCGATATGAAACGTGAAGAGATTTGCCG
CTTGCTGGCGGATAAAGTTAATAAACTGAAAAATAAAGAAAATAGTTTGTCAGAACTGTTGCCCGATGTGCGTTTGTTGT
ATGGCGAGACGCCTTTCGCACGTACACCGGTGATGTACGAGCCTGGCATCATAATTCTCTTTTCCGGGCATAAAATCGGT
TATATCAATGAACGCGTGTTTCGTTATGATGCCAATGAATACCTGCTGCTGACGGTGCCGTTGCCGTTTGAGTGCGAAAC
CTATGCCACGTCAGAGGTGCCGCTGGCAGGGTTGCGTCTCAATGTCGATATTTTGCAGTTACAGGAACTGTTGATGGACA
TTGGCGAAGATGAGCATTTCCAGCCGTCGGTGGCAGCCAGCGGGATTAACTCCGCCACGTTATCAGAAGAGATTTTATGC
GCGGCGGAGCGGTTACTCGACGTGATGGAGCGACCACTGGATGCGCGTATTCTCGGCAAACAGATCATCCGCGAAATTCT
GTACTACGTGCTGACCGGACCTTGCGGCGGCGCGTTACTGGCGCTGGTCAGTCGCCAGACTCACTTCAGTCTGATTAGCC
GCGTGCTGAAACGGATTGAGAATAAATACACCGAAAACCTGAGCGTCGAGCAACTGGCGGCAGAAGCCAACATGAGCGTA
TCGGCGTTCCACCATAATTTTAAGTCTGTCACCAGTACCTCGCCGTTGCAGTATTTGAAGAATTACCGTCTGCATAAGGC
GCGGATGATGATCATCCATGACGGCATGAAGGCCAGCGCAGCAGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTA
GCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGGGAAGATGCGGCAAGAATGCGGGCGATGCAGGGGAATTAA

Upstream 100 bases:

>100_bases
GAACGATCTGCCTGATGTTTTTCATTGTGATCGCCAGCGCCCTGGCTCTCAATGCTCATTTCTGCCAATGTCTTGCCTAT
TTCTCCAGAGTGCTGGAGAA

Downstream 100 bases:

>100_bases
ATACGTTCCCGGTACAGCAACCGGGAACAGGGAAAATCGTCAGGCGTTACAGTATTTTTTTTTAATCACCACAAACAGCG
TGCCTAACAAGCCAGCGGTT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIG
YINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSVAASGINSATLSEEILC
AAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSV
SAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN

Sequences:

>Translated_318_residues
MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIG
YINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSVAASGINSATLSEEILC
AAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSV
SAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN
>Mature_318_residues
MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIG
YINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSVAASGINSATLSEEILC
AAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSV
SAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=318, Percent_Identity=99.3710691823899, Blast_Score=652, Evalue=0.0,
Organism=Escherichia coli, GI1786496, Length=88, Percent_Identity=39.7727272727273, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35997; Mature: 35997

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFA
CCCCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
RTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRL
CCCCEECCCEEEEECCCEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEE
NVDILQLQELLMDIGEDEHFQPSVAASGINSATLSEEILCAAERLLDVMERPLDARILGK
CHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH
SAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRY
HHHHHHHHHHCCCCHHHHHHHCHHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHH
FGVTPGEDAARMRAMQGN
HCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFA
CCCCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
RTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRL
CCCCEECCCEEEEECCCEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEE
NVDILQLQELLMDIGEDEHFQPSVAASGINSATLSEEILCAAERLLDVMERPLDARILGK
CHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH
SAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRY
HHHHHHHHHHCCCCHHHHHHHCHHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHH
FGVTPGEDAARMRAMQGN
HCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]