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The map label for this gene is ytfJ [H]

Identifier: 218696690

GI number: 218696690

Start: 3480935

End: 3481498

Strand: Reverse

Name: ytfJ [H]

Synonym: EC55989_3397

Alternate gene names: 218696690

Gene position: 3481498-3480935 (Counterclockwise)

Preceding gene: 218696691

Following gene: 218696689

Centisome position: 67.54

GC content: 48.58

Gene sequence:

>564_bases
ATGATGTCATCTCGTTTGATTATTGCGCTGATTATCATGCTTTTAGCCCCGGGTGTGCAGGCACACAATTTCGTCACTGG
CAAAACGGTTACCCCTGTTTATATCCAGGAAGGCGGCGAGCTGCTTCTGAATAGCGACGACGAAATTCACTACCAAAAGT
GGAACAGCACACAATTAGCGGGAAAAGTCCGCATTATTCAGTATATCGCCGGGCGTAAGTCGGCGAAGAAAAAGAACTCA
CTGTTAATTAAAGCGGTTGAAGCGGCAAACTTTCCGCAGGATCGTTTTCAGCCCACCACCATTGTGAACACCGATGATGC
CATCTTTGGTACTGGCTATTTTGTTGTTGGCAAAATCGAAAAAAATAAACGCCGCTATCCGTGGGCGCAATTCATTATTG
ACGGCAATGGACAGGGACGCGTTGCCTGGCGCTTGCCGGAGCAGAGTTCAACCATTCTGGTGCTGAATAAAGCCGGGCAA
ATTCAGTGGGCAAAGGACGGCAGCCTGACGCCGGAAGAGGTAGATCATGTCATTGCGCTGGCGCAGAAACTGATCAATGA
ATAA

Upstream 100 bases:

>100_bases
TGGAAAACCGCCAGTCGTATGATGCACCGGTGGCGCTGGATAGCGATATTCGTCAGCGCTTAGAGCTGCTGATTTCGCGT
TTTCCGCTATAACCGGAGCA

Downstream 100 bases:

>100_bases
AAAATTCAAAGGATTGAGGGCGTTAGTGAGATGAAGCTGGTTGAACACTACATCATGCGTGGTACGCGCCGTCTGGTGCT
GATTATCGTCGGTTTTCTGA

Product: Putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MMSSRLIIALIIMLLAPGVQAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLAGKVRIIQYIAGRKSAKKKNS
LLIKAVEAANFPQDRFQPTTIVNTDDAIFGTGYFVVGKIEKNKRRYPWAQFIIDGNGQGRVAWRLPEQSSTILVLNKAGQ
IQWAKDGSLTPEEVDHVIALAQKLINE

Sequences:

>Translated_187_residues
MMSSRLIIALIIMLLAPGVQAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLAGKVRIIQYIAGRKSAKKKNS
LLIKAVEAANFPQDRFQPTTIVNTDDAIFGTGYFVVGKIEKNKRRYPWAQFIIDGNGQGRVAWRLPEQSSTILVLNKAGQ
IQWAKDGSLTPEEVDHVIALAQKLINE
>Mature_187_residues
MMSSRLIIALIIMLLAPGVQAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLAGKVRIIQYIAGRKSAKKKNS
LLIKAVEAANFPQDRFQPTTIVNTDDAIFGTGYFVVGKIEKNKRRYPWAQFIIDGNGQGRVAWRLPEQSSTILVLNKAGQ
IQWAKDGSLTPEEVDHVIALAQKLINE

Specific function: Unknown

COG id: COG3054

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0045 [H]

Homologues:

Organism=Escherichia coli, GI1790662, Length=184, Percent_Identity=54.8913043478261, Blast_Score=213, Evalue=8e-57,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006513 [H]

Pfam domain/function: PF09695 YtfJ_HI0045 [H]

EC number: NA

Molecular weight: Translated: 20860; Mature: 20860

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSSRLIIALIIMLLAPGVQAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLA
CCCCHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCEEEECCCCCEEEEECCCCCHH
GKVRIIQYIAGRKSAKKKNSLLIKAVEAANFPQDRFQPTTIVNTDDAIFGTGYFVVGKIE
HHHEEEHHHHCCCCCCCCCCEEEEEECCCCCCHHHCCCCEEECCCCCEEECCEEEEEEEE
KNKRRYPWAQFIIDGNGQGRVAWRLPEQSSTILVLNKAGQIQWAKDGSLTPEEVDHVIAL
CCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCEEECCCCCCCHHHHHHHHHH
AQKLINE
HHHHHCC
>Mature Secondary Structure
MMSSRLIIALIIMLLAPGVQAHNFVTGKTVTPVYIQEGGELLLNSDDEIHYQKWNSTQLA
CCCCHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCEEEECCCCCEEEEECCCCCHH
GKVRIIQYIAGRKSAKKKNSLLIKAVEAANFPQDRFQPTTIVNTDDAIFGTGYFVVGKIE
HHHEEEHHHHCCCCCCCCCCEEEEEECCCCCCHHHCCCCEEECCCCCEEECCEEEEEEEE
KNKRRYPWAQFIIDGNGQGRVAWRLPEQSSTILVLNKAGQIQWAKDGSLTPEEVDHVIAL
CCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCEEECCCCCCCHHHHHHHHHH
AQKLINE
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7764507; 9298646; 10493123 [H]