Click here to switch to the map view.

The map label for this gene is yghD

Identifier: 218696664

GI number: 218696664

Start: 3450499

End: 3451035

Strand: Reverse

Name: yghD

Synonym: EC55989_3369

Alternate gene names: 218696664

Gene position: 3451035-3450499 (Counterclockwise)

Preceding gene: 218696665

Following gene: 218696650

Centisome position: 66.95

GC content: 54.38

Gene sequence:

>537_bases
ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGGCACA
ACACCTGGCGGGGCGTTCTCCGCGTGAAAAGGGCATGTTACTGGCAGCGGTGGTGTTCCTGTTTAGCGTCGGATATTACG
TCCTCATCTGGCAGCCGTTGAGCGAACGGATAGAACAACAGGAGACAATGTTGCAGCAACTGGTGGCGATGAACACCAGA
CTGAGGAGCGCCGCGCCGGATATTATGGCGGCGCGAAAATCCGCCACAACAACGCCTGCGCAGGTATCGCGGGTTATCAG
TGACAGCGCTTCCGCGCACTCGGTAGTCATCAAGCGGATAGCCGAGCGTGGGGAGAATATTCAGGTCTGGATAGATCCGG
TGGTGTTTAATGACCTGCTGAACTGGTTAAACGCGCTGGATGAAAAGTATGCGCTGCGGGTGACACAAATTGATGCCAGT
GCTGCTGAGAAGACTGGGATGGTGAATGTGCAGCGGCTGGAGTTTGGACGGGGGTAA

Upstream 100 bases:

>100_bases
CTGCGTAGTGCACTGGCAACCGATTATGTTGTGCAACAGGACGCGTTACAGAAAGAGGGTGATGCGGTTTCCGGCGGCGT
AACGTTGCGGAGGAAATAAC

Downstream 100 bases:

>100_bases
AGTATCAGGAGATTAGTATCAATAAAATTACTCTCGTTAACGTGGCGAGAGTAATTCCCCCAGACTTTATAAGCAAACTT
TTTTCGTGAAGGTTATTGTC

Product: putative general secretion pathway protein YghD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETMLQQLVAMNTR
LRSAAPDIMAARKSATTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
AAEKTGMVNVQRLEFGRG

Sequences:

>Translated_178_residues
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETMLQQLVAMNTR
LRSAAPDIMAARKSATTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
AAEKTGMVNVQRLEFGRG
>Mature_178_residues
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIEQQETMLQQLVAMNTR
LRSAAPDIMAARKSATTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
AAEKTGMVNVQRLEFGRG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3149

COG function: function code U; Type II secretory pathway, component PulM

Gene ontology:

Cell location: Cell inner membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP M family [H]

Homologues:

Organism=Escherichia coli, GI1789339, Length=178, Percent_Identity=94.3820224719101, Blast_Score=348, Evalue=8e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007690
- InterPro:   IPR023229 [H]

Pfam domain/function: PF04612 GspM [H]

EC number: NA

Molecular weight: Translated: 20366; Mature: 20366

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPL
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHH
SERIEQQETMLQQLVAMNTRLRSAAPDIMAARKSATTTPAQVSRVISDSASAHSVVIKRI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
AERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDASAAEKTGMVNVQRLEFGRG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHCCCCC
>Mature Secondary Structure
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSVGYYVLIWQPL
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHH
SERIEQQETMLQQLVAMNTRLRSAAPDIMAARKSATTTPAQVSRVISDSASAHSVVIKRI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
AERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDASAAEKTGMVNVQRLEFGRG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]