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The map label for this gene is ygeH

Identifier: 218696448

GI number: 218696448

Start: 3209247

End: 3210623

Strand: Direct

Name: ygeH

Synonym: EC55989_3129

Alternate gene names: 218696448

Gene position: 3209247-3210623 (Clockwise)

Preceding gene: 218696447

Following gene: 218696449

Centisome position: 62.26

GC content: 34.71

Gene sequence:

>1377_bases
ATGGACTTAGAAAATAAATTCTCATATCATTTTCTTGAGGGATTAACGCTCACGGAAGATGGAATTCTTACTCAAGGAAA
TGAGCAAGTTTATATTCCACAGAAAGAGTTAGGTGTATTAATAGTATTACTTGAATCCGCTGGTCATGTTGTACTGAAAG
ATATGATCATCGAATCAGTATGGAAAAATATTATTGTTAGTGACGAGTCCCTGACAAGATGTATCTATTCTTTGCGCTGC
ATTTTTGAAAAAATTGGCTATGATCGTTGCATAGAAACAATCTACCGGAAAGGTTATCGTTTCAGCGGGCAGGTTTTCAA
AACTAAAATTAATGAAGATAATACTTCAGACTATTCCATAGCTATATTCCCTTTCACTACTTCATTGAATACACTGGATC
CATTAATACTTAATCAGGAATTAGTGCAAATCATTTCAAATAAAAAAATCGATGGTCTCTATACCTATCCGATGGCTGCG
ACAAATTTTTGTAATGATCACATATCTCAAAATTCATTCTTGAGCAGATTCAAGCCAGATTATTTCGTTACAGGAAGAAT
AAACCAGAATAATGCAGTGAACACTTTATACATTGAGTTGATCGACGCTAAAAACCTTTTCCTCATCGCCAGTAATCATC
TCCCTGTTGATGAACTACATAATACATCACAATTTATTATAGATAATATCCTTCAAACGGTACATAAACCAGAACGATCT
GTAAGATTAGCTAAGCAGGACCAAGGATATAAGAATCATTATTTATCAGATGAAATGTTAGCCGGAAAGAAAGAACTTTA
CGACTTCACCCCTGAAAGCATTTACAGGGCCATGACTATATTTGATAGATTACAAAATAAAAGTGATATACAGACGCTAA
AAACAGAATGTTATTGCCTTCTAGCGGAATGCCATATGTCTTTGGCACTTCATGGAAAAAGTGAACTTGAACTTGCTGCT
CAAAAAGCATTAGAGCTTTTAGATTATGTATCAGACATAACCACTGTCGATGGAAAAATTTTAGCTATTATGGGACTGAT
AACTGGTCTGTCTGGACAAGCAAAAGTATCTCATATCTTATTTGAACAGGCTAAGATACACTCAACTGATATAGCCTCTC
TCTACTACTATAGGGCACTAGTCCACTTTCATAATGAAAAAATTGAAGAGGCAAGGATTTGTATAGACAAATCACTACAA
CTCGAACCCAGAAGACGAAAAGCAGTTGTGATAAAAGAATGTGTAGATATGTATGTGCCTAACCCGCTCAAAAACAACAT
TAAACTCTACTATAAAGAAACTGAGAGTGAAAGCCATCGAGTTATAATTGACAACATTTTGAAATTAAAGCAGCTGACGA
GAATTTGTATGCGATAA

Upstream 100 bases:

>100_bases
GTAATTTCCTGTAGCATTAATGACACATAAATATGAATAGCCATAATTTCTATTGCTTAAGCAGGATGCAAGAAACCAAT
TTTTTCATAGAGGTTAACTA

Downstream 100 bases:

>100_bases
ATTTTTATTGACGCAATTTTATTATTTAGATGTATGCAACTTGTTATTTAAACAACAGAGATGAAAATATCTAAGATATT
CACCTTATTGCAAGATATTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC
IFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAA
TNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS
VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA
QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ
LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR

Sequences:

>Translated_458_residues
MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC
IFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAA
TNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS
VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA
QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ
LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR
>Mature_458_residues
MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRC
IFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAA
TNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS
VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA
QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ
LEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat

Homologues:

Organism=Escherichia coli, GI1789216, Length=458, Percent_Identity=100, Blast_Score=944, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGEH_ECOLI (P76639)

Other databases:

- EMBL:   U28375
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   E65068
- RefSeq:   AP_003415.1
- RefSeq:   NP_417329.1
- ProteinModelPortal:   P76639
- IntAct:   P76639
- STRING:   P76639
- PRIDE:   P76639
- EnsemblBacteria:   EBESCT00000004944
- EnsemblBacteria:   EBESCT00000014510
- GeneID:   946265
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2820
- KEGG:   eco:b2852
- EchoBASE:   EB2853
- EcoGene:   EG13038
- eggNOG:   COG0457
- GeneTree:   EBGT00050000010435
- HOGENOM:   HBG469199
- OMA:   NFHNERI
- ProtClustDB:   PRK11906
- BioCyc:   EcoCyc:G7472-MONOMER
- Genevestigator:   P76639
- GO:   GO:0005622
- GO:   GO:0006350
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.25.40.10
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00862

Pfam domain/function: PF00486 Trans_reg_C; SSF46894 Bipartite_resp_reg_C-effector

EC number: NA

Molecular weight: Translated: 52754; Mature: 52754

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESV
CCCCCCCCHHHHCCCEEECCCCEECCCCEEEECHHHHCEEEEEECCCCHHHHHHHHHHHH
WKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSI
HHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEE
AIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSRFKPD
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCHHHHHHCCCC
YFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS
EEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCHHH
VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCL
HHHHHHCCCCHHCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHIL
HHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH
FEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
NPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR
CCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESV
CCCCCCCCHHHHCCCEEECCCCEECCCCEEEECHHHHCEEEEEECCCCHHHHHHHHHHHH
WKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSI
HHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEE
AIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSRFKPD
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCHHHHHHCCCC
YFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERS
EEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCHHH
VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCL
HHHHHHCCCCHHCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHIL
HHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH
FEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
NPLKNNIKLYYKETESESHRVIIDNILKLKQLTRICMR
CCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503