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The map label for this gene is hyfI

Identifier: 218696116

GI number: 218696116

Start: 2834569

End: 2835327

Strand: Direct

Name: hyfI

Synonym: EC55989_2774

Alternate gene names: 218696116

Gene position: 2834569-2835327 (Clockwise)

Preceding gene: 218696115

Following gene: 218696117

Centisome position: 54.99

GC content: 55.99

Gene sequence:

>759_bases
ATGAGTCCAGTGCTTACGCAATATGTCAGCCAGCCCATCACGCTGGACGAGCAAACGCAAAAGATGAAGCAGCATTTGCT
ACAGGATATCCGTCGCTCGGCTTACGTTTATCGCGTCGATTGCGGCGGCTGCAACGCCTGTGAAATCGAAATTTTTGCTG
CCATCACACCAGTATTCGACGCAGAACGTTTTGGCATTAAGGTTGTTTCATCACCGCGTCACGCCGATATTTTGTTATTT
ACTGGCGCAGTCACCCGGGCGATGCGTATGCCTGCACTTCGGGCGTATGAGTCTGCCCCCGATCATAAAATCTGTGTTTC
CTACGGCGCGTGCGGTGTCGGTGGCGGTATTTTCCACGATCTCTACAGCGTCTGGGGCGGCAGCGACACCATTGTCCCCA
TTGATGTTTGGATCCCCGGCTGCCCGCCAACACCGGCCGCCACCATTCACGGTTTCGCCGTGGCGCTCGGTTTGCTGCAA
CAGAAGATTCACGCTGTGGATTATCGCGATCCCACCGGGGTGACTATGCAACCGTTGTGGCCACAGATCCCGCCATCACA
GCGTATCGCCATTGAGCGAGAAGCGCGGCGGCTGGCGGGCTATCGTCAGGGGCGAGAAATTTGCGATCGGCTCCTGCGCC
ATTTAAGCGACGATCCTACAGGAAATCGGGTTAACACCTGGTTGCGCGAAGCCGACGATCCGCGTCTCAATAGTATCGTT
CAGCAACTCTTTCGCGTTCTCCGGGGGTTACATGGCTGA

Upstream 100 bases:

>100_bases
AAATGTTGCGGGCGCAAGCGAGCGTCTGCCCGGAGTGCAAACAACGCGCGACGCTGATCAACGACGATACAGATGTACCG
CTGGTGGCTAAGGAGCAGCT

Downstream 100 bases:

>100_bases
GGAGTGCGGGGAAATTGTTTTCTGGACGCTGCGAAAAAAGTTTGTCGCCAGTAGCGACGAGATGCCGGAACACAGCTCTC
AGGTAATGTATTACTCGCTG

Product: hydrogenase 4, Fe-S subunit

Products: H2; oxidized ferredoxin [C]

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSPVLTQYVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLF
TGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLREADDPRLNSIV
QQLFRVLRGLHG

Sequences:

>Translated_252_residues
MSPVLTQYVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLF
TGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLREADDPRLNSIV
QQLFRVLRGLHG
>Mature_251_residues
SPVLTQYVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFT
GAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQ
KIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLREADDPRLNSIVQ
QLFRVLRGLHG

Specific function: Unknown

COG id: COG3260

COG function: function code C; Ni,Fe-hydrogenase III small subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 20 kDa subunit family [H]

Homologues:

Organism=Homo sapiens, GI187281616, Length=123, Percent_Identity=41.4634146341463, Blast_Score=100, Evalue=9e-22,
Organism=Escherichia coli, GI1788834, Length=251, Percent_Identity=98.804780876494, Blast_Score=513, Evalue=1e-147,
Organism=Escherichia coli, GI1789074, Length=240, Percent_Identity=64.5833333333333, Blast_Score=309, Evalue=1e-85,
Organism=Escherichia coli, GI1788624, Length=122, Percent_Identity=40.1639344262295, Blast_Score=91, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17509685, Length=122, Percent_Identity=37.7049180327869, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI18859983, Length=110, Percent_Identity=40, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24642371, Length=110, Percent_Identity=40, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24651058, Length=123, Percent_Identity=39.0243902439024, Blast_Score=97, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137
- InterPro:   IPR006138
- InterPro:   IPR014406 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28056; Mature: 27924

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS01150 COMPLEX1_20K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPVLTQYVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEECCCHHC
AERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHD
HHHHCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
LYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLW
HHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
PQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLREADDPRLNSIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHH
QQLFRVLRGLHG
HHHHHHHHHCCC
>Mature Secondary Structure 
SPVLTQYVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD
CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEECCCHHC
AERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHD
HHHHCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
LYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLW
HHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
PQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLREADDPRLNSIV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHH
QQLFRVLRGLHG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton; reduced ferredoxin [C]

Specific reaction: Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]