| Definition | Escherichia coli 55989, complete genome. |
|---|---|
| Accession | NC_011748 |
| Length | 5,154,862 |
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The map label for this gene is yfdF
Identifier: 218695944
GI number: 218695944
Start: 2661985
End: 2663043
Strand: Direct
Name: yfdF
Synonym: EC55989_2589
Alternate gene names: 218695944
Gene position: 2661985-2663043 (Clockwise)
Preceding gene: 218695943
Following gene: 218695947
Centisome position: 51.64
GC content: 34.94
Gene sequence:
>1059_bases ATGCTACCATCTATTTCAATCAACAATACCAGCGCAACTTACCCAGAATCCATTAATGAAAATAACAATGATGAAGTTAA TGGATTAGTACAAGAGCTCAAAAACCTTTTTAATGGTAAGGAAGGAATAAGCACCTGTATTAAACATCTACTTGAGCTTA TAAAAAACGCCATACGAGTAAACGACGATCCTTATAGATTTAATATTAATAATTCCTCAGTTACTTATATTGATATTGGC TCCAATGATACAGACCATATTACTATTGGTATCGACAACCAAAAACCAATAGAATTACCTGCGAACTATAAAGACAAAGA ACTCGTCCGTACTATCATTAATGACAACATAGTTGAGAAGACTCATGATATCAATAACAAGGAAATGATCTTCAGCGCAT TAAAAGAAATATATGATGGAGATCCTGGTTTTATCTTCGATAAGATATCACACAAACTCAGACATACGGTAACGGAATTT GATGAGAGCGGGAATAGCGAACCAACGGACTTATTTACCTGGTACGGTAAAGATAAAAAAGGCGACTCTCTCGCTATTGT AATTAAAAATAAAAACGGAAATGATTACTTATCTCTCGGTTACTACGATCAGGACGACTACCACATTCAAAGAGGAATTC GTATTAATGGTGATAGTCTCACCCAATATTGTAGTGAAAAAGCCAGGAATGCTTCAGCGTGGTTTGAAAGCAGTAAAGCT ATCATGGCAGAATCATTTGCAACAGGTTCCGATCATCAGGTTGTAAACGAGCTCAACGGGGAAAGACTGAGAGAACCTAA CGAAGTTTTTAAACGTTTAGGTCGAGCAATAAGATATAATTTTCAAGTGGACGATGCAAAATTTAGACGCGACAATGTAA AAGAAATAATTTCTAATTTATTCGCTAACAAAGTTGACGTTGACCATCCTGAAAATAAATACAAAGACTTTAAGGATCTC GAAGATAACGTTGAAAAAAGACTTCAAAATCGCCAGGCGAAATATCAAAATGAAATTAATCAACTATCTGCGCCAGGTGT TAATTTTGATGATATTTAA
Upstream 100 bases:
>100_bases TCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATC AATCAAAATGGAATAAAATC
Downstream 100 bases:
>100_bases AATTATTTTTCCAGTTTTTTGATTTTTCAACGCCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATCA TTACGTCCGGGTCATTGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGISTCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIG SNDTDHITIGIDNQKPIELPANYKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEF DESGNSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSEKARNASAWFESSKA IMAESFATGSDHQVVNELNGERLREPNEVFKRLGRAIRYNFQVDDAKFRRDNVKEIISNLFANKVDVDHPENKYKDFKDL EDNVEKRLQNRQAKYQNEINQLSAPGVNFDDI
Sequences:
>Translated_352_residues MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGISTCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIG SNDTDHITIGIDNQKPIELPANYKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEF DESGNSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSEKARNASAWFESSKA IMAESFATGSDHQVVNELNGERLREPNEVFKRLGRAIRYNFQVDDAKFRRDNVKEIISNLFANKVDVDHPENKYKDFKDL EDNVEKRLQNRQAKYQNEINQLSAPGVNFDDI >Mature_352_residues MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGISTCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIG SNDTDHITIGIDNQKPIELPANYKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEF DESGNSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSEKARNASAWFESSKA IMAESFATGSDHQVVNELNGERLREPNEVFKRLGRAIRYNFQVDDAKFRRDNVKEIISNLFANKVDVDHPENKYKDFKDL EDNVEKRLQNRQAKYQNEINQLSAPGVNFDDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788687, Length=352, Percent_Identity=90.625, Blast_Score=654, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40372; Mature: 40372
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGISTCIKHLLELIKNAIRV CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC NDDPYRFNINNSSVTYIDIGSNDTDHITIGIDNQKPIELPANYKDKELVRTIINDNIVEK CCCCEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHH THDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEFDESGNSEPTDLFTWYGKDKK HHCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC GDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSEKARNASAWFESSKA CCEEEEEEECCCCCCEEEECCCCCCCCEEECCCEECCHHHHHHHHHHHCCHHHHHHCCHH IMAESFATGSDHQVVNELNGERLREPNEVFKRLGRAIRYNFQVDDAKFRRDNVKEIISNL HHHHHCCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHHEECCEECCHHHHHHHHHHHHHHH FANKVDVDHPENKYKDFKDLEDNVEKRLQNRQAKYQNEINQLSAPGVNFDDI HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MLPSISINNTSATYPESINENNNDEVNGLVQELKNLFNGKEGISTCIKHLLELIKNAIRV CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC NDDPYRFNINNSSVTYIDIGSNDTDHITIGIDNQKPIELPANYKDKELVRTIINDNIVEK CCCCEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHH THDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEFDESGNSEPTDLFTWYGKDKK HHCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC GDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSEKARNASAWFESSKA CCEEEEEEECCCCCCEEEECCCCCCCCEEECCCEECCHHHHHHHHHHHCCHHHHHHCCHH IMAESFATGSDHQVVNELNGERLREPNEVFKRLGRAIRYNFQVDDAKFRRDNVKEIISNL HHHHHCCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHHEECCEECCHHHHHHHHHHHHHHH FANKVDVDHPENKYKDFKDLEDNVEKRLQNRQAKYQNEINQLSAPGVNFDDI HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]