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The map label for this gene is yodC

Identifier: 218695561

GI number: 218695561

Start: 2214229

End: 2214411

Strand: Reverse

Name: yodC

Synonym: EC55989_2178

Alternate gene names: 218695561

Gene position: 2214411-2214229 (Counterclockwise)

Preceding gene: 218695562

Following gene: 218695560

Centisome position: 42.96

GC content: 51.91

Gene sequence:

>183_bases
ATGAGCTTTATGGTTAGTGAGGAAGTTACGGTTAAAGAGGGCGGCCCGCGGATGATTGTCACTGGATACTCCAGCGGTAT
GGTTGAGTGTCGTTGGTATGACGGTTACGGGGTCAAGCGGGAAGCTTTTCATGAAACCGAGCTTGTTCCAGGGGAGGGGA
GTCGTTCTGCGGAAGAAGTTTGA

Upstream 100 bases:

>100_bases
AATGCGCGGTCAGGCACATTAATACTCGCACAAGCTATTATGCAAAATTCGCCATCTTCAACTAAGGTGAACAAGTTTCA
CTCGAAAAAAGGAGGCGAGT

Downstream 100 bases:

>100_bases
AAGGGTATCATTAAGACCAGGCCGGATCACATCCGGCCTGGTGTGCCAATGCCTGCAATGAATGATAGTCGCGTCTTATC
ATGCCACCATTATAAAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 60; Mature: 59

Protein sequence:

>60_residues
MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV

Sequences:

>Translated_60_residues
MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV
>Mature_59_residues
SFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV

Specific function: Unknown

COG id: COG5475

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788267, Length=60, Percent_Identity=100, Blast_Score=121, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YODC_ECO57 (P64518)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   G85813
- PIR:   G90965
- RefSeq:   NP_288417.1
- RefSeq:   NP_310722.1
- EnsemblBacteria:   EBESCT00000027173
- EnsemblBacteria:   EBESCT00000055879
- GeneID:   913057
- GeneID:   961957
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z3048
- KEGG:   ecs:ECs2695
- GeneTree:   EBGT00050000008909
- HOGENOM:   HBG417351
- OMA:   FHENELM
- ProtClustDB:   CLSK880251
- BioCyc:   ECOL83334:ECS2695-MONOMER
- InterPro:   IPR019226

Pfam domain/function: PF09926 DUF2158

EC number: NA

Molecular weight: Translated: 6679; Mature: 6547

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV
CCEECCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFHETELVPGEGSRSAEEV
CEECCCCEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796