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The map label for this gene is yebA

Identifier: 218695422

GI number: 218695422

Start: 2091496

End: 2092818

Strand: Reverse

Name: yebA

Synonym: EC55989_2035

Alternate gene names: 218695422

Gene position: 2092818-2091496 (Counterclockwise)

Preceding gene: 218695423

Following gene: 218695421

Centisome position: 40.6

GC content: 52.46

Gene sequence:

>1323_bases
GTGCAACAGATAGCCCGCTCTGTCGCCCTGGCGTTTAATAATTTACCGCGACCACACCGCGTTATGTTGGGGTCGCTCAC
CGTTCTTACTCTGGCCGTCGCTGTCTGGCGGCCCTATGTTTATCACCGCGATGCCACGCCAATTGTCAAAACCATTGAGC
TGGAACAGAACGAAATTCGTTCGCTCTTACCTGAAGCCAGTGAGCCGATTGATCAAGCTGCACAAGAAGATGAAGCCATT
CCCCAGGACGAACTGGATGACAAAATCGCCGGTGAAGCGGGCGTGCATGAATATGTTGTTTCCACTGGCGATACGCTAAG
CAGCATTCTCAATCAGTATGGTATTGATATGGGTGATATCACCCAACTGGCTGCTGCCGACAAAGAATTGCGTAACCTGA
AAATCGGTCAACAACTCTCCTGGACATTAACCGCGGACGGCGAACTGCAGCGCCTCACCTGGGAAGTGTCTCGTCGTGAA
ACCCGAACCTATGACCGTACTGCCGCTAACGGTTTTAAAATGACCAGCGAAATGCAGCAAGGAGAGTGGGTTAACAATCT
GCTGAAAGGTACCGTCGGGGGGAGCTTTGTTGCCAGCGCCAGAAACGCCGGTTTAACCAGCGCCGAAGTGAGCGCAGTGA
TTAAAGCCATGCAGTGGCAAATGGATTTCCGCAAACTGAAAAAAGGCGATGAATTTGCGGTATTAATGTCTCGAGAAATG
CTTGATGGTAAACGTGAGCAAAGCCAGCTGCTGGGCGTACGTTTGCGTTCAGAAGGTAAAGATTATTACGCTATCCGCGC
TGAAGATGGCAAATTCTACGATCGTAACGGTACTGGTCTGGCGAAAGGATTCTTGCGATTCCCGACGGCGAAACAGTTCC
GTATCTCGTCTAACTTTAACCCGCGTCGTACTAATCCTGTGACCGGTCGCGTTGCACCACACAGAGGTGTTGATTTCGCC
ATGCCGCAGGGTACGCCAGTGCTTTCAGTGGGTGACGGTGAAGTGGTGGTTGCCAAACGCAGTGGCGCAGCAGGTTATTA
TGTGGCTATTCGTCATGGTCGCAGCTACACCACGCGTTATATGCACTTGCGCAAGATTCTGGTGAAACCGGGACAGAAGG
TGAAACGTGGCGACCGTATCGCGCTTTCCGGTAATACCGGACGTTCAACCGGGCCACATCTGCACTATGAAGTATGGATA
AACCAGCAGGCCGTAAACCCGCTGACGGCAAAACTGCCGCGTACCGAAGGGCTGACCGGCTCCGATCGTCGCGAATTCCT
GGCGCAGGCCAAAGAGATTGTGCCGCAGCTACGGTTTGATTAA

Upstream 100 bases:

>100_bases
GAATATCAAACTGGGTAAAACAAGCTATTCAGAATTCCTGAGTCAATTAGCCAACCAGTATGCGAGCTGCCTGAAAGGAG
ATTAATGAGGAAGTGATTAC

Downstream 100 bases:

>100_bases
TTAACATCCATTCGCAGCCGGTACGCAGTCAGTACCGGCTTTTTTTATTTGGTGCGGGGCAAGTTGCGCCGCTACACTAT
CACCAGATTGATTTTTGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREM
LDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFA
MPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWI
NQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD

Sequences:

>Translated_440_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREM
LDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFA
MPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWI
NQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD
>Mature_440_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREM
LDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFA
MPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWI
NQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD

Specific function: Could be involved in cell wall degradation or formation

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat

Homologues:

Organism=Escherichia coli, GI87081989, Length=440, Percent_Identity=100, Blast_Score=907, Evalue=0.0,
Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=33.9285714285714, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEBA_ECOL6 (P0AFT0)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_754162.1
- ProteinModelPortal:   P0AFT0
- SMR:   P0AFT0
- MEROPS:   M23.005
- EnsemblBacteria:   EBESCT00000044910
- GeneID:   1036817
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c2270
- GeneTree:   EBGT00050000009952
- HOGENOM:   HBG708607
- OMA:   GFMRFPT
- ProtClustDB:   PRK11649
- GO:   GO:0006508
- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482
- PANTHER:   PTHR21666:SF7
- SMART:   SM00257

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23; SSF51261 Dup_hybrid_motif

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49058; Mature: 49058

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1a4789c0)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIR
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCHHHHH
SLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDI
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH
TQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQ
HHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREM
CHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH
LDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFN
HCCHHHHHHHHHHHEECCCCCEEEEEECCCEEECCCCCHHHHHHHHCCCCCEEEECCCCC
PRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRY
CCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCCEEEEEEECCCCHHHHH
MHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTG
HHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHCCCHHHCCCCCCCCCC
SDRREFLAQAKEIVPQLRFD
CHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIR
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCHHHHH
SLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDI
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH
TQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQ
HHHHHHHHHHHHCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREM
CHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHH
LDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFN
HCCHHHHHHHHHHHEECCCCCEEEEEECCCEEECCCCCHHHHHHHHCCCCCEEEECCCCC
PRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRY
CCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCCEEEEEEECCCCHHHHH
MHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTG
HHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHCCCHHHCCCCCCCCCC
SDRREFLAQAKEIVPQLRFD
CHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157