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The map label for this gene is ydjH

Identifier: 218695331

GI number: 218695331

Start: 2004412

End: 2005359

Strand: Reverse

Name: ydjH

Synonym: EC55989_1941

Alternate gene names: 218695331

Gene position: 2005359-2004412 (Counterclockwise)

Preceding gene: 218695332

Following gene: 218695330

Centisome position: 38.9

GC content: 45.36

Gene sequence:

>948_bases
ATGGATAATCTCGACGTTATTTGTATAGGTGCCGCTATTGTTGATATTCCATTGCAACCGGTCAGTAAAAATATCTTTGA
TGTGGATTCTTATCCTCTTGAAAGAATCGCAATGACCACCGGGGGTGATGCAATAAATGAAGCAACAATTATTTCTCGTC
TGGGCCATCGCACAGCATTAATGAGTCGTATTGGTAAAGATGCCGCAGGGCAATTTATTCTCGACCATTGCCGCAAAGAG
AATATTGATATTCAAAGCCTGAAGCAGGACGTCAGCATAGATACCTCTATTAACGTTGGACTGGTGACGGAGGATGGCGA
GCGGACGTTTGTCACAAACCGTAATGGCAGTCTGTGGAAATTGAATATTGACGATGTTGATTTTGCGCGGTTTTCTCAGG
CGAAATTATTATCACTGGCCAGTATTTTCAACAGTCCACTATTGGATGGTAAAGCGCTAACAGAAATTTTTACGCAAGCT
AAAGCCCGGCAGATGATTATCTGTGCCGATATGATCAAACCGCGGTTGAATGAAACGCTGGATGATATTTGCGAAGCATT
GAGTTATGTCGATTATCTGTTTCCTAATTTTGCCGAGGCAAAATTACTCACCGGGAAAGAGACACTGGATGAAATTGCTG
ACTGCTTTCTTGCGTGCGGCGTAAAAACGGTGGTGATTAAAACGGGTAAAGACGGCTGCTTTATCAAGCGTGGTGACATG
ACGATGAAGGTGCCGGCGGTCGCAGGAATAACCGCCATCGACACCATTGGCGCGGGCGATAACTTTGCTTCAGGTTTTAT
TGCGGCACTGTTAGAAGGCAAAAATCTGCGTGAATGCGCACGCTTTGCCAATGCAACGGCGGCTATCTCGGTTCTAAGCG
TCGGTGCCACCACCGGCGTAAAAAACAGAAAGCTGGTCGAACAATTGCTGGAAGAATACGAAGGATAA

Upstream 100 bases:

>100_bases
CCTTTCCTGCATTTAGAACGTGAAGTACGTAAAGCTGTAAAAGAACGGGCATTGGAAAAAATTAAACTGTTCGGTTCTGA
TGGCAAAGCGGAATAATGAT

Downstream 100 bases:

>100_bases
TGAAGGCAAATGAAAAAGATACCTTTAGGCACAACGGATATTACGCTTTCGCGAATGGGGTTGGGGACATGGGCCATTGG
CGGCGGTCCTGCATGGAATG

Product: putative sugar kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCRKE
NIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQA
KARQMIICADMIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM
TMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEG

Sequences:

>Translated_315_residues
MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCRKE
NIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQA
KARQMIICADMIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM
TMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEG
>Mature_315_residues
MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQFILDHCRKE
NIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQA
KARQMIICADMIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM
TMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEG

Specific function: Unknown

COG id: COG0524

COG function: function code G; Sugar kinases, ribokinase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbohydrate kinase pfkB family

Homologues:

Organism=Escherichia coli, GI87081971, Length=315, Percent_Identity=100, Blast_Score=639, Evalue=0.0,
Organism=Escherichia coli, GI1790193, Length=301, Percent_Identity=30.8970099667774, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082281, Length=276, Percent_Identity=27.8985507246377, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788484, Length=266, Percent_Identity=24.4360902255639, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDJH_ECOLI (P77493)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   D64937
- RefSeq:   AP_002391.1
- RefSeq:   NP_416286.4
- PDB:   3H49
- PDB:   3IN1
- PDBsum:   3H49
- PDBsum:   3IN1
- ProteinModelPortal:   P77493
- SMR:   P77493
- STRING:   P77493
- EnsemblBacteria:   EBESCT00000001042
- EnsemblBacteria:   EBESCT00000015962
- GeneID:   946285
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5289
- KEGG:   eco:b1772
- EchoBASE:   EB3257
- EcoGene:   EG13484
- eggNOG:   COG0524
- GeneTree:   EBGT00050000008219
- HOGENOM:   HBG467814
- OMA:   DDVDFSR
- ProtClustDB:   CLSK880190
- BioCyc:   EcoCyc:G6959-MONOMER
- Genevestigator:   P77493
- InterPro:   IPR011611
- InterPro:   IPR002173
- InterPro:   IPR002139
- PRINTS:   PR00990

Pfam domain/function: PF00294 PfkB

EC number: NA

Molecular weight: Translated: 34122; Mature: 34122

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00583 PFKB_KINASES_1; PS00584 PFKB_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTAL
CCCCCEEEEEEEEEECCCCHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHH
MSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWK
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCEEE
LNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMIICADMIKPRLNETL
EECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
DDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM
HHHHHHHHHHHHHCCCCCHHEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCC
TMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGV
EEECCCHHCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHCCCCCC
KNRKLVEQLLEEYEG
CHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDAINEATIISRLGHRTAL
CCCCCEEEEEEEEEECCCCHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHH
MSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWK
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCEEE
LNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQMIICADMIKPRLNETL
EECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHH
DDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM
HHHHHHHHHHHHHCCCCCHHEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCC
TMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGV
EEECCCHHCCHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHCCCCCC
KNRKLVEQLLEEYEG
CHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503