Click here to switch to the map view.

The map label for this gene is ydjF

Identifier: 218695329

GI number: 218695329

Start: 2002527

End: 2003285

Strand: Reverse

Name: ydjF

Synonym: EC55989_1939

Alternate gene names: 218695329

Gene position: 2003285-2002527 (Counterclockwise)

Preceding gene: 218695330

Following gene: 218695328

Centisome position: 38.86

GC content: 42.03

Gene sequence:

>759_bases
GTGGCGGCAAAAGACAGGATTCAGGCAATTAAGCAAATGGTTGCCAACGATAAAAAAGTGACAGTCTCAAATTTGAGTGG
GATTTTTCAGGTAACCGAAGAAACCATTCGCCGCGATCTTGAGAAGCTGGAAGATGAAGGCTTTTTGACCAGAACCTATG
GTGGTGCTGTTTTAAATACAGCGATGTTGACGGAGAATATCCATTTTTATAAGCGCGCTTCATCGTTTTATGAAGAGAAG
CAGCTTATTGCACGCAAGGCACTACCCTTTATCGACAATAAAACCACCATGGCAGCCGATTCCAGTAGTACCGTAATGGA
ATTGCTCAAATTGTTACAGGACCGTAGTGACCTGACGTTGCTAACCAACTCGGCGGAAGCGATTCATGTTCTGGCTCAGT
CAGAAATTAAAGTCGTTTCAACGGGTGGGGAACTAAACAAAAATACACTTTCACTGCAAGGAAGAATTACTAAAGAGATC
ATCAGCCGCTATCATGTCGATATCATGGTAATGAGTTGTAAAGGTCTTGATATTAACAGCGGCGCGCTGGACTCTAATGA
AGCGGAAGCTGAAATCAAAAAGACAATGATCCGTCAGGCGACAGAAGTTGCGTTATTGGTTGATCACTCTAAGTTTGATC
GCAAAGCTTTTGTCCAGTTAGCTGATTTTAGTCATATTAATTACATAATAACTGATAAATCACCGGGTGCAGAGTGGATA
GCATTTTGCAAAGACAATAATATCCAGCTGGTGTGGTAA

Upstream 100 bases:

>100_bases
TGTGATGAAAATCTGTGATTCAAACAGGTTATTTTGAAAGTAAACATCGGTTATGCGATAATCGCGCTAATGTGATGTAA
AAAGATACAGGGGTGTAATC

Downstream 100 bases:

>100_bases
TTTAAGCACACGTTGTCAATATTATTTGTTCCTGCGCCTTGAAATAAAATGATGATAAAGATGCGGCAAGTGAATTTGCC
GCAATTGCTACCTTTTTAGC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEK
QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI
ISRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
AFCKDNNIQLVW

Sequences:

>Translated_252_residues
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEK
QLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI
ISRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
AFCKDNNIQLVW
>Mature_251_residues
AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQ
LIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEII
SRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIA
FCKDNNIQLVW

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=252, Percent_Identity=99.2063492063492, Blast_Score=513, Evalue=1e-147,
Organism=Escherichia coli, GI1789829, Length=251, Percent_Identity=29.4820717131474, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789170, Length=234, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789059, Length=234, Percent_Identity=31.1965811965812, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI87082344, Length=258, Percent_Identity=25.1937984496124, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=25.2, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=25.8771929824561, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787063, Length=250, Percent_Identity=21.2, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI226510968, Length=233, Percent_Identity=24.8927038626609, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790753, Length=240, Percent_Identity=24.5833333333333, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28251; Mature: 28120

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
CCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTL
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEE
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINS
EECCCHHEEEEECCCEEEEECCCCCCCCEEEECCHHHHHHHHHHCEEEEEEEECCCCCCC
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCEE
AFCKDNNIQLVW
EEEECCCEEEEC
>Mature Secondary Structure 
AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
CCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTL
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEE
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINS
EECCCHHEEEEECCCEEEEECCCCCCCCEEEECCHHHHHHHHHHCEEEEEEEECCCCCCC
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCEE
AFCKDNNIQLVW
EEEECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]