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The map label for this gene is xynB [H]

Identifier: 218692469

GI number: 218692469

Start: 4875104

End: 4876039

Strand: Direct

Name: xynB [H]

Synonym: ECED1_4917

Alternate gene names: 218692469

Gene position: 4875104-4876039 (Clockwise)

Preceding gene: 218692468

Following gene: 218692471

Centisome position: 93.58

GC content: 36.86

Gene sequence:

>936_bases
ATGGGGTTTATAATGAATAAAGATAAATCTTTAAATGAAATGATGTTAAGCTTGTTTAATAAATCAACTATTGTTGACTT
GTCAAGTGAGACAATATCTGAGAGTAAATCTCTTTCAGGCCGTATTTATCAGGATCCTGAACATAACGGGGAATTTGAAC
TTGATCGTGTATTGACAGATATTTATGCTCCTCAGTTAATTATTTTTTTACCAGATAAACCAAATGGAACAGGAATATTG
ATTATTCCCGGGGGGGGCTACCAGGCTGTTATGTTAGATAAGGAAGGTACAGCTCTTGCTCCAGAGTTTTTATCTCAGGG
CTATACATTATTTGTTCTTAGTTACAGATTACCATCGCCAGCTGAGGAAGAAAATATAAACAAAACTTTTATTGATGCAA
TATCTGCAATGCTTTATATTCGTAAGAATGCTGATAAATGGCATCTACAGCGTCATCGTATTGGTGTATTAGGATTTTCT
GCTGGGGGGCATATCGCCTCAACGTTTGTGAATCAGATTTGTGATTTCAAACGTTCTTCTGACAGTAAAGAACAAGAGAT
TTTCGCTATTCCCGATTTTGTCGGGTTAATTTATCCTGTAATATCAATGAAAGATGATGTGACACATCCAGGCTCCAGGA
AGCAATTACTGGGGGATAATAGTACCTCAGAAAATATAATACAATATAGTGCGGATCTTAATGTCACATCATGTTTTCCT
CCTGTGTTTTTACTCCATTGTTGTGATGATGATCTTGTGTCAATTGAAAACAGTCTGCTCATGTACCGTGGCCTAATAGA
GAAAGGCGTTTCTGCTGAAATGCATCTCTATGAGAAAGGAGGGCATGGTTTTAGTATTCAGTGGGCCACAGATCTTCCTG
TTGGAGGATGGATAAAACTGTTTATGGACTGGATGTATTCTCATGGATTTAAATAA

Upstream 100 bases:

>100_bases
GATGTTATTTATCTGAAAAAAAATGACAAACAAATAAAGATTGTTAAATAACTGTAATGCAGGTGACTGTATTAGTTGTT
CAGTCACCTGAGTTATTTTA

Downstream 100 bases:

>100_bases
TATTTATGGTGACTACCTGGTGAAGCGTCGAGTAACTATGATGCTTCAATTCGTTTATAAAGGTGATTATACATTAGCTG
TTCAGCTTTATCACAATCAT

Product: putative hydrolase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MGFIMNKDKSLNEMMLSLFNKSTIVDLSSETISESKSLSGRIYQDPEHNGEFELDRVLTDIYAPQLIIFLPDKPNGTGIL
IIPGGGYQAVMLDKEGTALAPEFLSQGYTLFVLSYRLPSPAEEENINKTFIDAISAMLYIRKNADKWHLQRHRIGVLGFS
AGGHIASTFVNQICDFKRSSDSKEQEIFAIPDFVGLIYPVISMKDDVTHPGSRKQLLGDNSTSENIIQYSADLNVTSCFP
PVFLLHCCDDDLVSIENSLLMYRGLIEKGVSAEMHLYEKGGHGFSIQWATDLPVGGWIKLFMDWMYSHGFK

Sequences:

>Translated_311_residues
MGFIMNKDKSLNEMMLSLFNKSTIVDLSSETISESKSLSGRIYQDPEHNGEFELDRVLTDIYAPQLIIFLPDKPNGTGIL
IIPGGGYQAVMLDKEGTALAPEFLSQGYTLFVLSYRLPSPAEEENINKTFIDAISAMLYIRKNADKWHLQRHRIGVLGFS
AGGHIASTFVNQICDFKRSSDSKEQEIFAIPDFVGLIYPVISMKDDVTHPGSRKQLLGDNSTSENIIQYSADLNVTSCFP
PVFLLHCCDDDLVSIENSLLMYRGLIEKGVSAEMHLYEKGGHGFSIQWATDLPVGGWIKLFMDWMYSHGFK
>Mature_310_residues
GFIMNKDKSLNEMMLSLFNKSTIVDLSSETISESKSLSGRIYQDPEHNGEFELDRVLTDIYAPQLIIFLPDKPNGTGILI
IPGGGYQAVMLDKEGTALAPEFLSQGYTLFVLSYRLPSPAEEENINKTFIDAISAMLYIRKNADKWHLQRHRIGVLGFSA
GGHIASTFVNQICDFKRSSDSKEQEIFAIPDFVGLIYPVISMKDDVTHPGSRKQLLGDNSTSENIIQYSADLNVTSCFPP
VFLLHCCDDDLVSIENSLLMYRGLIEKGVSAEMHLYEKGGHGFSIQWATDLPVGGWIKLFMDWMYSHGFK

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 34824; Mature: 34693

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFIMNKDKSLNEMMLSLFNKSTIVDLSSETISESKSLSGRIYQDPEHNGEFELDRVLTD
CCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHH
IYAPQLIIFLPDKPNGTGILIIPGGGYQAVMLDKEGTALAPEFLSQGYTLFVLSYRLPSP
HCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEECHHHHHCCEEEEEEEECCCCC
AEEENINKTFIDAISAMLYIRKNADKWHLQRHRIGVLGFSAGGHIASTFVNQICDFKRSS
CCHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCC
DSKEQEIFAIPDFVGLIYPVISMKDDVTHPGSRKQLLGDNSTSENIIQYSADLNVTSCFP
CCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCHHCC
PVFLLHCCDDDLVSIENSLLMYRGLIEKGVSAEMHLYEKGGHGFSIQWATDLPVGGWIKL
HHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCHHHHH
FMDWMYSHGFK
HHHHHHHCCCC
>Mature Secondary Structure 
GFIMNKDKSLNEMMLSLFNKSTIVDLSSETISESKSLSGRIYQDPEHNGEFELDRVLTD
CCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHH
IYAPQLIIFLPDKPNGTGILIIPGGGYQAVMLDKEGTALAPEFLSQGYTLFVLSYRLPSP
HCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEECHHHHHCCEEEEEEEECCCCC
AEEENINKTFIDAISAMLYIRKNADKWHLQRHRIGVLGFSAGGHIASTFVNQICDFKRSS
CCHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCC
DSKEQEIFAIPDFVGLIYPVISMKDDVTHPGSRKQLLGDNSTSENIIQYSADLNVTSCFP
CCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCHHCC
PVFLLHCCDDDLVSIENSLLMYRGLIEKGVSAEMHLYEKGGHGFSIQWATDLPVGGWIKL
HHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCHHHHH
FMDWMYSHGFK
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]