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The map label for this gene is yjdO

Identifier: 218692424

GI number: 218692424

Start: 4828049

End: 4828222

Strand: Direct

Name: yjdO

Synonym: ECED1_4864

Alternate gene names: 218692424

Gene position: 4828049-4828222 (Clockwise)

Preceding gene: 218692423

Following gene: 218692430

Centisome position: 92.68

GC content: 34.48

Gene sequence:

>174_bases
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTTCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG

Upstream 100 bases:

>100_bases
AGACTTACCGGATATTGATTTTGACCTCAGCATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAGCCAGGAA
GGATAAGAAGAACATAAAAA

Downstream 100 bases:

>100_bases
GAGCTGTAGTTGAGTGGACCCGCTGGTTATCTTGAAACGAAGCGTCTCTCCTCAAAACTGGATTTGCGGAATGACGAACG
AAGCAGTCGCCTGACTGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 57; Mature: 56

Protein sequence:

>57_residues
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Sequences:

>Translated_57_residues
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
>Mature_56_residues
ALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydcX

Homologues:

Organism=Escherichia coli, GI87082373, Length=57, Percent_Identity=100, Blast_Score=110, Evalue=3e-26,
Organism=Escherichia coli, GI87081912, Length=57, Percent_Identity=63.1578947368421, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YJDO_ECO57 (P64648)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   D86108
- RefSeq:   NP_290762.1
- EnsemblBacteria:   EBESCT00000025986
- EnsemblBacteria:   EBESCT00000057226
- GeneID:   959995
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5731
- GeneTree:   EBGT00050000011494
- HOGENOM:   HBG416156
- OMA:   TWPLSFP
- ProtClustDB:   CLSK2517930
- InterPro:   IPR019689

Pfam domain/function: PF10753 DUF2566

EC number: NA

Molecular weight: Translated: 6555; Mature: 6424

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x21875f54)-; HASH(0x1f6f31d8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
CHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCH
>Mature Secondary Structure 
ALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
HHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796