| Definition | Escherichia coli ED1a chromosome, complete genome. |
|---|---|
| Accession | NC_011745 |
| Length | 5,209,548 |
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The map label for this gene is dppD [H]
Identifier: 218692372
GI number: 218692372
Start: 4769860
End: 4770756
Strand: Reverse
Name: dppD [H]
Synonym: ECED1_4808
Alternate gene names: 218692372
Gene position: 4770756-4769860 (Counterclockwise)
Preceding gene: 218692373
Following gene: 218692371
Centisome position: 91.58
GC content: 52.73
Gene sequence:
>897_bases TTGCCAGTCTGGCCTTTAATCTGCTGGGTGATGGCTTGCGCGATGTTCTGGAGCCTCAACATGACTGACTCACGTCTTAG TATCAATAATCTCTGCGTCGATTATCCGGAGTCCCGGGTCGTCAACAATGTCAGTTTTACATTAGGCAATGAACGTCTGG CGCTGGTCGGTGAGTCGGGTTCAGGTAAGTCCATGACCGCCCGCGCCCTGATGGGGCTGGTGCGTAAACCGGGTGTAGTA ACCGCGGACACACTTAACATTCTGGGGCGTGATGCACTCACCCTTAACGCGCGTGGATGGCAACAGTTGCGCGGTAACGA TATCGCGATGGTATTGCAAGATCCGCGTTACGCGCTTAATCCAGTAAAGACAGTAAAAGCGCAACTGGAAGAGGCACTTA CGCTCCATCAACGTCTGAACCGCCGCGAGAAAGAAGAGAAAATAAACACCGCAATTCAGGCTGTCGGCCTCAATACGCGA GTACTGCAAAGCTATCCTCGTGAACTTTCTGGCGGCATGGGGCAGCGAGTGATGATTGCAATTGCGCTCATCAACGATCC CCGGGTATTGATTGCCGATGAGCCAACATCAGCACTGGATGTGCGCCTGCGTAATCAGATTCTGGAACTGCTGGTTACCC AGTGTGAACAACGTCAGATGGCAATGTTGCTGATCAGTCACGACCTGCCATTAGTTGCCCAATTTTGCCATCGGGTGCTG GTGATGTATCAGGGAAATAAGTTGGATGAAATGCACGCTGCTGCGCTACCTACAGCAACGCATCCTTACACGCGCACACT GTGGACTTGCCGCCCAAATGCACAAACTTACGGGCAGATGCTGCCGACGCTGGACAGGACGGCAATGACGCCGGAGAAAT ACCATGACGATTGTTGA
Upstream 100 bases:
>100_bases CGCCCGCCAATGGCGGAATGGGGAGCCATGATCGCCGACGGTATGCAGGTCATTTTTGATCAATGGTGGATTGCCGCCGC TCCCGGCGCAATTATCTTAA
Downstream 100 bases:
>100_bases AATTAATCACTTACAGGTGACTTTTGCTGAGAAAACCGCAGTTTCTGCCGCCAGTTTTTCGGTTAATGCCGGAGAGACAT TTAGTTTAATTGGCGAATCA
Product: putative dipeptide/oligopeptide/nickel transport system, ATPase
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MPVWPLICWVMACAMFWSLNMTDSRLSINNLCVDYPESRVVNNVSFTLGNERLALVGESGSGKSMTARALMGLVRKPGVV TADTLNILGRDALTLNARGWQQLRGNDIAMVLQDPRYALNPVKTVKAQLEEALTLHQRLNRREKEEKINTAIQAVGLNTR VLQSYPRELSGGMGQRVMIAIALINDPRVLIADEPTSALDVRLRNQILELLVTQCEQRQMAMLLISHDLPLVAQFCHRVL VMYQGNKLDEMHAAALPTATHPYTRTLWTCRPNAQTYGQMLPTLDRTAMTPEKYHDDC
Sequences:
>Translated_298_residues MPVWPLICWVMACAMFWSLNMTDSRLSINNLCVDYPESRVVNNVSFTLGNERLALVGESGSGKSMTARALMGLVRKPGVV TADTLNILGRDALTLNARGWQQLRGNDIAMVLQDPRYALNPVKTVKAQLEEALTLHQRLNRREKEEKINTAIQAVGLNTR VLQSYPRELSGGMGQRVMIAIALINDPRVLIADEPTSALDVRLRNQILELLVTQCEQRQMAMLLISHDLPLVAQFCHRVL VMYQGNKLDEMHAAALPTATHPYTRTLWTCRPNAQTYGQMLPTLDRTAMTPEKYHDDC >Mature_297_residues PVWPLICWVMACAMFWSLNMTDSRLSINNLCVDYPESRVVNNVSFTLGNERLALVGESGSGKSMTARALMGLVRKPGVVT ADTLNILGRDALTLNARGWQQLRGNDIAMVLQDPRYALNPVKTVKAQLEEALTLHQRLNRREKEEKINTAIQAVGLNTRV LQSYPRELSGGMGQRVMIAIALINDPRVLIADEPTSALDVRLRNQILELLVTQCEQRQMAMLLISHDLPLVAQFCHRVLV MYQGNKLDEMHAAALPTATHPYTRTLWTCRPNAQTYGQMLPTLDRTAMTPEKYHDDC
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI156105685, Length=230, Percent_Identity=33.0434782608696, Blast_Score=72, Evalue=7e-13, Organism=Escherichia coli, GI1789963, Length=277, Percent_Identity=38.9891696750903, Blast_Score=188, Evalue=3e-49, Organism=Escherichia coli, GI1788506, Length=263, Percent_Identity=41.4448669201521, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI145693107, Length=262, Percent_Identity=41.9847328244275, Blast_Score=172, Evalue=2e-44, Organism=Escherichia coli, GI48994883, Length=271, Percent_Identity=40.2214022140221, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI1787759, Length=287, Percent_Identity=37.2822299651568, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI1787500, Length=243, Percent_Identity=39.917695473251, Blast_Score=154, Evalue=7e-39, Organism=Escherichia coli, GI1787548, Length=279, Percent_Identity=35.1254480286738, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1789962, Length=236, Percent_Identity=37.7118644067797, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1789890, Length=236, Percent_Identity=38.5593220338983, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=41.0628019323672, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1787758, Length=268, Percent_Identity=31.7164179104478, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1787547, Length=229, Percent_Identity=31.8777292576419, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081834, Length=229, Percent_Identity=35.8078602620087, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=32.8888888888889, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=31.981981981982, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788225, Length=249, Percent_Identity=29.718875502008, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=30.7017543859649, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1789032, Length=233, Percent_Identity=33.0472103004292, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786398, Length=259, Percent_Identity=30.8880308880309, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI48994997, Length=250, Percent_Identity=27.6, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789672, Length=248, Percent_Identity=27.4193548387097, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=29.7777777777778, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790190, Length=232, Percent_Identity=31.4655172413793, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786872, Length=201, Percent_Identity=32.3383084577114, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=31.6239316239316, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787089, Length=226, Percent_Identity=32.7433628318584, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788644, Length=236, Percent_Identity=28.8135593220339, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=197, Percent_Identity=33.502538071066, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=32.843137254902, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081791, Length=224, Percent_Identity=30.3571428571429, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789873, Length=197, Percent_Identity=30.9644670050761, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1786253, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=31.390134529148, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081709, Length=222, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787164, Length=223, Percent_Identity=30.9417040358744, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1790162, Length=227, Percent_Identity=26.431718061674, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788450, Length=220, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=25.4166666666667, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788053, Length=206, Percent_Identity=29.6116504854369, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787792, Length=79, Percent_Identity=48.1012658227848, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=27.7511961722488, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=29.126213592233, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=222, Percent_Identity=25.2252252252252, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI48995001, Length=212, Percent_Identity=27.8301886792453, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17541710, Length=211, Percent_Identity=32.2274881516588, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71983523, Length=258, Percent_Identity=25.1937984496124, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71983510, Length=258, Percent_Identity=25.1937984496124, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71983516, Length=258, Percent_Identity=25.1937984496124, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534520, Length=248, Percent_Identity=29.8387096774194, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17510237, Length=232, Percent_Identity=22.4137931034483, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17565938, Length=230, Percent_Identity=30.8695652173913, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=180, Percent_Identity=30, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574533, Length=225, Percent_Identity=30.2222222222222, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28574744, Length=168, Percent_Identity=32.1428571428571, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI17647219, Length=207, Percent_Identity=28.9855072463768, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 33466; Mature: 33335
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVWPLICWVMACAMFWSLNMTDSRLSINNLCVDYPESRVVNNVSFTLGNERLALVGESG CCHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCHHHHCCCEEEEECCCEEEEEECCC SGKSMTARALMGLVRKPGVVTADTLNILGRDALTLNARGWQQLRGNDIAMVLQDPRYALN CCCHHHHHHHHHHHHCCCEEEHHHHHHHCCCEEEEECCCHHHHCCCCEEEEEECCCCHHC PVKTVKAQLEEALTLHQRLNRREKEEKINTAIQAVGLNTRVLQSYPRELSGGMGQRVMIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEE IALINDPRVLIADEPTSALDVRLRNQILELLVTQCEQRQMAMLLISHDLPLVAQFCHRVL EEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VMYQGNKLDEMHAAALPTATHPYTRTLWTCRPNAQTYGQMLPTLDRTAMTPEKYHDDC HHHCCCCCHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHCCCHHHHCCCCHHHCCCC >Mature Secondary Structure PVWPLICWVMACAMFWSLNMTDSRLSINNLCVDYPESRVVNNVSFTLGNERLALVGESG CHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCHHHHCCCEEEEECCCEEEEEECCC SGKSMTARALMGLVRKPGVVTADTLNILGRDALTLNARGWQQLRGNDIAMVLQDPRYALN CCCHHHHHHHHHHHHCCCEEEHHHHHHHCCCEEEEECCCHHHHCCCCEEEEEECCCCHHC PVKTVKAQLEEALTLHQRLNRREKEEKINTAIQAVGLNTRVLQSYPRELSGGMGQRVMIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEE IALINDPRVLIADEPTSALDVRLRNQILELLVTQCEQRQMAMLLISHDLPLVAQFCHRVL EEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VMYQGNKLDEMHAAALPTATHPYTRTLWTCRPNAQTYGQMLPTLDRTAMTPEKYHDDC HHHCCCCCHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHCCCHHHHCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458 [H]