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The map label for this gene is yjbH [H]

Identifier: 218692314

GI number: 218692314

Start: 4701477

End: 4703573

Strand: Direct

Name: yjbH [H]

Synonym: ECED1_4744

Alternate gene names: 218692314

Gene position: 4701477-4703573 (Clockwise)

Preceding gene: 218692313

Following gene: 218692315

Centisome position: 90.25

GC content: 54.51

Gene sequence:

>2097_bases
ATGAAAAAAAGACATCTGCTTAGCTTACTGGCGCTGGGCATTAGCACAGCTTGCTACGGCGAAACATATCCTGCGCCCAT
TGGTCCGTCGCAATCGGATTTCGGTGGCGTAGGATTATTACAAACGCCCACCGCGCGCATGGCGCGGGAAGGGGAGCTGA
GCCTGAACTATCGCGATAACGATCAGTACCGTTATTACTCAGCTTCAGTGCAACTCTTCCCGTGGCTGGAAACAACGCTG
CGCTACACCGACGTGCGCACCCGGCAGTACAGCAGCGTCGAAGCGTTCTCTGGCGATCAAACGTATAAAGATAAAGCCTT
CGATCTCAAACTGCGTTTGTGGGAAGAGAGTTATTGGCTGCCGCAAGTGGCGGTTGGTGCGCGGGATATCGGCGGTACGG
GGCTGTTTGATGCGGAATATCTTGTTGCCAGCAAAGCCTGGGGGCCGTTCGATTTTACGCTCGGCCTGGGATGGGGATAT
CTGGGCACCAGCGGTAATGTGAAAAATCCGCTCTGTTCAGCCAGTGATAAATATTGCTATCGCGATAACAGCTACAAACA
AGCGGGATCTATCGACGGCAGTCAGATGTTCCACGGCCCGGCCTCACTGTTTGGCGGCGTGGAATACCAGACGCCCTGGC
AACCGCTGCGCCTGAAACTGGAGTATGAAGGTAATAATTATCAGCAGGATTTTGCCGGGAAGCTGGAGCAAAAAAGTAAG
TTTAACGTCGGGGCGATTTATCGCGTTACCGATTGGGCCGACGTTAACCTTAGCTATGAACGTGGCAACACCTTTATGTT
TGGCGTCACGCTGCGCACCAACTTTAACGATCTGCGCCCGTCCTACAACGATAACGCCCGACCGAAATACCAGCCGCAAC
CGCAGGATGCCATTTTGCAGCACTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAACGCCGGACTGGCCGATCCG
CAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGATCATCCG
TGCTAATCGGATCGTGATGAACGATCTGCCGGATGGGATCAAAACGATCCGCATTACGGAAAATCGCCTTAACATGCCGC
AGGTGACGACGGAAACCGATGTCGCCAGCCTGAAAAATCATCTCGGCGGAGAGCCGTTGGGCCACGAAACGACGCTGGCG
CAAAAACGCGTCGAGCCAGTGGTTCCGAAGTCCACCGAGCAGGGCTGGTATATCGACAAATCACGCTTTGATTTCCATAT
CGATCCGGTGCTGAACCAGTCGGTCGGTGGCCCGGAAAACTTTTACATGTATCAGCTGGGCGTGATGGGAACGGCGGATT
TGTGGCTGACGGACCATCTGCTGACCACCGGCAGCCTGTTTGCTAACCTTGCCAACAACTACGACAAGTTTAACTACACC
AATCCACCGCAGGACTCGCACTTACCGCGCGTGCGTACCCATGTGCGCGAGTATGTGCAGAATGATGTCTATGTGAATAA
CCTGCAAGCCAACTACTTCCAGCATCTGGGCAACGGCTTCTACGGTCAGGTCTACGGAGGTTATCTCGAAACCATGTTTG
GCGGCGTGGGGGCAGAAGTGTTGTATCGCCCGCTGGATAGCAACTGGGCGTTTGGTCTGGATGCCAACTACGTTAAACAG
CGCGACTGGCGTAGCGCAAAAGATATGATGAAATTCACCGATTACAGCGTGAAAACCGGACATCTGACCGCGTACTGGAC
GCCATCTTTCGCCCAGGACGTGTTAGTGAAAGCGAGCGTCGGGCAGTATCTGGCTGGGGATAAAGGCGGCACGCTGGAGA
TCGCTAAACGCTTTGACAGCGGCGTGGTGGTTGGCGGCTATGCCACGATCACCAACGTTTCGAAAGAGGAGTACGGCGAA
GGGGACTTCACCAAAGGCGTGTATGTCTCTGTACCGTTGGATCTCTTCTCGTCTGGCCCGACACGCAGCCGTGCGGCGAT
TGGCTGGACGCCGCTGACGCGTGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGATATGACCAGCGACCGTA
GCGTCAATTTCCGCTAA

Upstream 100 bases:

>100_bases
GCATTATTTATGTTGGCCTCGCGGACTCCGTCTGGAGTGAGACACCTGATGCCCTTAACGCCGACATTCTTCAGACTCTG
ACGCAGCGGATACCCCAATA

Downstream 100 bases:

>100_bases
GTCATGGGAAAGGTGCCAGTTTTCGCACTCACTGGCACCTTCATTCTTAATGGCCTGTCGAGCCATCAGGAACGCAGTTC
ACCCCCGGTTTGCGATCTGG

Product: putative porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL
RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPKYQPQPQDAILQHSVVANQLTLLKYNAGLADP
QIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLGGEPLGHETTLA
QKRVEPVVPKSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEVLYRPLDSNWAFGLDANYVKQ
RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGE
GDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR

Sequences:

>Translated_698_residues
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL
RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPKYQPQPQDAILQHSVVANQLTLLKYNAGLADP
QIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLGGEPLGHETTLA
QKRVEPVVPKSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEVLYRPLDSNWAFGLDANYVKQ
RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGE
GDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
>Mature_698_residues
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL
RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPKYQPQPQDAILQHSVVANQLTLLKYNAGLADP
QIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLGGEPLGHETTLA
QKRVEPVVPKSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEVLYRPLDSNWAFGLDANYVKQ
RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGE
GDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ymcA [H]

Homologues:

Organism=Escherichia coli, GI1790461, Length=698, Percent_Identity=99.4269340974212, Blast_Score=1438, Evalue=0.0,
Organism=Escherichia coli, GI1787219, Length=696, Percent_Identity=64.5114942528736, Blast_Score=949, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010344 [H]

Pfam domain/function: PF06082 DUF940 [H]

EC number: NA

Molecular weight: Translated: 78506; Mature: 78506

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCC
DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL
CCEEEEEEEEEEEECHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEEEEEECCCCCC
PQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY
CCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEE
RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
CCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCC
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPKYQPQPQDAILQ
CCCEEEEEEECEEEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCHHHHHH
HSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGI
HHHHHCEEEEEEECCCCCCCEEEECCCEEEEECCCEEECCCCCCEEEECEEEECCCCCCC
KTIRITENRLNMPQVTTETDVASLKNHLGGEPLGHETTLAQKRVEPVVPKSTEQGWYIDK
EEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEC
SRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT
CCCCEEECCHHCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCC
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEV
CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCC
LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV
EEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHH
GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGP
CHHHCCCCCCEEHHHHHCCCCEEEECCCEEECCCHHHCCCCCCCCCEEEEECHHHHCCCC
TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCC
DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL
CCEEEEEEEEEEEECHHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEEEEEEEECCCCCC
PQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY
CCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEE
RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
CCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCC
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPKYQPQPQDAILQ
CCCEEEEEEECEEEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCHHHHHH
HSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPDGI
HHHHHCEEEEEEECCCCCCCEEEECCCEEEEECCCEEECCCCCCEEEECEEEECCCCCCC
KTIRITENRLNMPQVTTETDVASLKNHLGGEPLGHETTLAQKRVEPVVPKSTEQGWYIDK
EEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEC
SRFDFHIDPVLNQSVGGPENFYMYQLGVMGTADLWLTDHLLTTGSLFANLANNYDKFNYT
CCCCEEECCHHCCCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCC
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEV
CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCC
LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV
EEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHH
GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGP
CHHHCCCCCCEEHHHHHCCCCEEEECCCEEECCCHHHCCCCCCCCCEEEEECHHHHCCCC
TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]