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The map label for this gene is sorC [H]

Identifier: 218692306

GI number: 218692306

Start: 4692962

End: 4693993

Strand: Reverse

Name: sorC [H]

Synonym: ECED1_4736

Alternate gene names: 218692306

Gene position: 4693993-4692962 (Counterclockwise)

Preceding gene: 218692308

Following gene: 218692305

Centisome position: 90.1

GC content: 49.32

Gene sequence:

>1032_bases
TTGAAAGGCCATCATGATGGGGTTATATCAGATCAAGCGGTGAGAAAGCGTATTTGCACAAATGTGCAGAACCAGGAGGC
GGCAATGGAAAACAGTGACGATATCCGTTTGATTGTGAAGATTGCCCAACTCTATTACGAACAGGATATGACGCAGGCGC
AAATTGCGCGCGAACTGGGTATTTACCGCACCACCATCAGCCGCTTGCTTAAACGAGGCCGCGATCAGGGAATTGTCACC
ATCGCCATCAACTATGACTACAACGAAAATCTCTGGCTGGAGCAGCAAGTGAAGCAAAAGTTTAGCCTGAAAGACGTTGT
GGTGGTGTCAGGAAATGATGAGGATGAAGATACTCAACTGGCGATGATGGGGTTACACGGCGCGCAACTGCTGGATCGCT
TGCTGGAACCTGGCGATATTGTCGGTTTTTCCTGGGGCCGCGCGGTGAGCGCACTGGTTGAAAACTTGCCGCAGGCGGGG
CAATCGCGGCAGTTAATTTGCGTGCCGATTATTGGCGGCCCGTCCGGTAAACTCGAAAGCCGCTATCACGTAAACACATT
AACCTACAGCGCGGCAGCGAAGCTGAAAGGGGAATCGCATCTCGCGGATTTTCCGGCTCTGCTGGATAACCCATTAATTC
GTAATGGGATCATGCAGTCTCAGCACTTTAAAACCATCTCTGCCTACTGGGATAATCTGGATGTCGCCCTGGTGGGAATT
GGCTCACCGGCCATTCGCGACGGCGCTAACTGGCATGCGTTTTATGGTGGTGAAGAGAGTGACGACCTGAATGCCCGCCA
GGTTGCTGGCGATATTTGCTCGCGCTTTTTTGATATTCACGGCGCAATGGTTGAAACGAATATGAGCGAAAAAACACTCT
CTATCGAAATGAATAAATTAAAGCAGGCACGGTATTCCATTGGCATTGCCATGAGCGAAGAAAAATACAGCGGAATTGTT
GGTGCACTGCGTGGAAAATATATTAATTGTCTGGTAACGAATAGCAGCACAGCTGAACTATTACTGAAATAA

Upstream 100 bases:

>100_bases
TTACGCATCGCTGCACACCTGTGCTGATGACTACTACGCAGAGAAACAAATGTGCAAGAGAAAGCGCTATTTCCCCCCAT
GCAAAGAGTGAAAAATCGCT

Downstream 100 bases:

>100_bases
AAATCTTCCCGATGTTTACCGTAATAAAAATTACGGCGGGTCCCTATTATCTAAAATCAGGAGTCTGTTATGCAAACGTG
GTTAAATTTGCAGGATAAAA

Product: sorbitol/sorbose operon activator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKGHHDGVISDQAVRKRICTNVQNQEAAMENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGIVT
IAINYDYNENLWLEQQVKQKFSLKDVVVVSGNDEDEDTQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAG
QSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGI
GSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIV
GALRGKYINCLVTNSSTAELLLK

Sequences:

>Translated_343_residues
MKGHHDGVISDQAVRKRICTNVQNQEAAMENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGIVT
IAINYDYNENLWLEQQVKQKFSLKDVVVVSGNDEDEDTQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAG
QSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGI
GSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIV
GALRGKYINCLVTNSSTAELLLK
>Mature_343_residues
MKGHHDGVISDQAVRKRICTNVQNQEAAMENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGIVT
IAINYDYNENLWLEQQVKQKFSLKDVVVVSGNDEDEDTQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAG
QSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGI
GSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIV
GALRGKYINCLVTNSSTAELLLK

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=318, Percent_Identity=29.874213836478, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI87082414, Length=318, Percent_Identity=24.8427672955975, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 38022; Mature: 38022

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGHHDGVISDQAVRKRICTNVQNQEAAMENSDDIRLIVKIAQLYYEQDMTQAQIARELG
CCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
IYRTTISRLLKRGRDQGIVTIAINYDYNENLWLEQQVKQKFSLKDVVVVSGNDEDEDTQL
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEE
AMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLES
EEECCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCC
RYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGI
EEEEEEEEEHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEEC
GSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKL
CCCHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEHHHH
KQARYSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK
HHHHHHEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCHHEEC
>Mature Secondary Structure
MKGHHDGVISDQAVRKRICTNVQNQEAAMENSDDIRLIVKIAQLYYEQDMTQAQIARELG
CCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
IYRTTISRLLKRGRDQGIVTIAINYDYNENLWLEQQVKQKFSLKDVVVVSGNDEDEDTQL
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEE
AMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLES
EEECCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCC
RYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGI
EEEEEEEEEHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEEC
GSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKL
CCCHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEHHHH
KQARYSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK
HHHHHHEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCHHEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]