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The map label for this gene is yiiT

Identifier: 218692207

GI number: 218692207

Start: 4564672

End: 4565100

Strand: Direct

Name: yiiT

Synonym: ECED1_4625

Alternate gene names: 218692207

Gene position: 4564672-4565100 (Clockwise)

Preceding gene: 218692206

Following gene: 218692212

Centisome position: 87.62

GC content: 43.59

Gene sequence:

>429_bases
ATGGCTTATAAACACATTGGCGTGGCAATTTCCGGGAATGAAGAAGATGCCTTACTGGTGAATAAAGCCCTGGAGCTCGC
CAGACATAATGACGCTCACCTGACGTTAATTCATATTGATGATGGCTTAAGCGAGTTGTATCCGGGTATCTACTTCCCTG
CAACAGAAGATATTCTTCAATTGTTGAAGAATAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCG
AAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCT
TGTCTGTGGTCATCACCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGTTGAGTGCGGATC
TCTTGATCGTGCCGTTTATCGACAAGTAA

Upstream 100 bases:

>100_bases
TTGATGCGGCCTTCACCTTCTCATGCCAGGCCGAGATGATTATTTTTGAGTTATCACTGCGTTCGTTAGCTTGATGGAGT
TGCTTTAGAAGGAGTTAAAT

Downstream 100 bases:

>100_bases
CCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCCTTCAGC
AACTGTTGTGTATCGCGCAC

Product: universal stress protein UspD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWP
KTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINKLSADLLIVPFIDK

Sequences:

>Translated_142_residues
MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWP
KTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINKLSADLLIVPFIDK
>Mature_141_residues
AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPK
TKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINKLSADLLIVPFIDK

Specific function: Required for resistance to DNA-damaging agents

COG id: COG0589

COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the universal stress protein A family

Homologues:

Organism=Escherichia coli, GI1790358, Length=142, Percent_Identity=99.2957746478873, Blast_Score=292, Evalue=7e-81,
Organism=Escherichia coli, GI1789909, Length=142, Percent_Identity=35.9154929577465, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI1788205, Length=140, Percent_Identity=32.1428571428571, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): USPD_ECO57 (P67090)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   H86081
- PIR:   H91234
- RefSeq:   NP_290552.1
- RefSeq:   NP_312875.1
- ProteinModelPortal:   P67090
- SMR:   P67090
- EnsemblBacteria:   EBESCT00000026121
- EnsemblBacteria:   EBESCT00000057171
- GeneID:   915045
- GeneID:   960217
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5468
- KEGG:   ecs:ECs4848
- GeneTree:   EBGT00050000009429
- HOGENOM:   HBG733992
- OMA:   LADECDY
- ProtClustDB:   PRK09982
- BioCyc:   ECOL83334:ECS4848-MONOMER
- GO:   GO:0005737
- InterPro:   IPR014729
- InterPro:   IPR006016
- Gene3D:   G3DSA:3.40.50.620

Pfam domain/function: PF00582 Usp

EC number: NA

Molecular weight: Translated: 16275; Mature: 16144

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQ
CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCCCCCCCHHHHHH
LLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLM
HHHCCCCCHHHHHHCCCCCCHHHEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH
PAYRGMINKLSADLLIVPFIDK
HHHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure 
AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQ
CCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCCCCCCCHHHHHH
LLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLM
HHHCCCCCHHHHHHCCCCCCHHHEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHH
PAYRGMINKLSADLLIVPFIDK
HHHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796