Click here to switch to the map view.

The map label for this gene is yiiR

Identifier: 218692205

GI number: 218692205

Start: 4563694

End: 4564134

Strand: Direct

Name: yiiR

Synonym: ECED1_4623

Alternate gene names: 218692205

Gene position: 4563694-4564134 (Clockwise)

Preceding gene: 218692202

Following gene: 218692206

Centisome position: 87.6

GC content: 48.75

Gene sequence:

>441_bases
ATGACCATACAGCAATGGTTATTCTCATTTAAAGGGCGTATTGGACGCCGTGATTTCTGGATTTGGATAGGCCTGTGGTT
CGCAGGCATGCTGGTGCTTTTCTCACTGGCGGGTAAAAATTTACTCGATATTCAGACCGCGGCGTTTTGCCTTGTGTGCT
TGCTTTGGCCAACAGCGGCAGTAACCGTTAAGCGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATT
GTGGCGTGGATGCTGCTGGCGGGTAACTGGGCAATTTTACCGGGTGTCTGGCAATGGGCGGTGGGGCGTTTTGTCCCGAC
ATTGATTCTGGTGATGATGCTTATCGATCTTGGTGCGTTTGTTGGCACACAAGGCGAAAATAAATATGGTAAAGATACCC
AGGATGTGAAGTATAAAGCCGACAATAAATCAAGTAATTAA

Upstream 100 bases:

>100_bases
TGACAGTACCTTTTGTTATGACTGGCTCCGATTAAAACGATATCTGTCGCCCTTGTCAAAAGGGTAGAATCCTGGAAAAG
ACAACCATCAAGGAACTTAC

Downstream 100 bases:

>100_bases
CCTTTAATATATCTCTTATCGCTATTTTTTTCCGGGATTGTTATTTCCACGATGCAAGTGACAATGCCCGGAAAATCCTT
CTGAACTCTTCACCTTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMI
VAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN

Sequences:

>Translated_146_residues
MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMI
VAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN
>Mature_145_residues
TIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIV
AWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAFVGTQGENKYGKDTQDVKYKADNKSSN

Specific function: Unknown

COG id: COG3152

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790355, Length=146, Percent_Identity=100, Blast_Score=293, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIIR_ECO57 (P0AF35)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   F86081
- PIR:   F91234
- RefSeq:   NP_290550.1
- RefSeq:   NP_312873.1
- ProteinModelPortal:   P0AF35
- EnsemblBacteria:   EBESCT00000028125
- EnsemblBacteria:   EBESCT00000058959
- GeneID:   915056
- GeneID:   960222
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5466
- KEGG:   ecs:ECs4846
- GeneTree:   EBGT00050000011374
- HOGENOM:   HBG742220
- OMA:   KSGWWAL
- ProtClustDB:   CLSK880816
- BioCyc:   ECOL83334:ECS4846-MONOMER
- InterPro:   IPR008523

Pfam domain/function: PF05656 DUF805

EC number: NA

Molecular weight: Translated: 16542; Mature: 16411

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTQGENKYGKDTQDVKYKADNKSSN
HCCCCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTQGENKYGKDTQDVKYKADNKSSN
HCCCCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796