Click here to switch to the map view.

The map label for this gene is kdgT [H]

Identifier: 218692194

GI number: 218692194

Start: 4553043

End: 4553987

Strand: Direct

Name: kdgT [H]

Synonym: ECED1_4612

Alternate gene names: 218692194

Gene position: 4553043-4553987 (Clockwise)

Preceding gene: 218692193

Following gene: 218692195

Centisome position: 87.4

GC content: 52.59

Gene sequence:

>945_bases
ATGACGCATCAGCCCTTAAAAATATGCCGACAGGTGATGGAAATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGG
GATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCA
CCAACGGGATGATTACCGGTACGCTGGTGGTAACTAAAATTGCCGTCGCGTGGGTGGTTGCGGCAATTGCCTCGCGCATT
ATTCCGGAACATGGTGTTGAAGTTGGATTTTTTGCCGGACTTTCAACGTTGGCGCTGGTGGCGGCGATGGATATGACCAA
CGGCGGACTTTACGCTTCCATCATGCAGCAGTACGGCACAAAAGAAGAAGCTGGGGCATTTGTGTTGATGTCGTTGGAGT
CCGGGCCGCTCATGACGATGATTATTCTGGGCACTGCCGGGATTGCCTCGTTTGAACCGCATGTTTTCGTCGGCGCAGTA
TTGCCGTTCCTGGTGGGCTTTGCCCTGGGGAACCTTGACCCTGAGTTACGAGAATTTTTCAGCAAAGCGGTGCAGACGCT
TATTCCATTCTTTGCCTTCGCACTGGGCAATACCATTGATTTGACTGTAATTGCCCAGACAGGTTTGCTGGGGATCCTGT
TGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGGTGGCGATGGC
ACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCTGAAATGGTGCCTGCGTT
TAAACCTATGGCTCCGGCAGCAACTTCGCTGGTCGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCT
CTATCTGGTCACGTAAAGTCAAAGCCAGAGCGGCGAAAATCGAAATTTTAGGTACGGTGAAATAA

Upstream 100 bases:

>100_bases
AAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATCAAATGAATGTCTATCTTCGTTTCCATCAA
CACTGATGCTCCGTTGAGGA

Downstream 100 bases:

>100_bases
ACCAGCTTCCTTAATCCCCACAGCCGGATGAACTAACGTTCGTCCGGTTTTCAATTGCGTTTCTGCCTGGATACTTACCG
CGAAAACAACACGCCTGACA

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MTHQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTLVVTKIAVAWVVAAIASRI
IPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAV
LPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGGGDG
TAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK

Sequences:

>Translated_314_residues
MTHQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTLVVTKIAVAWVVAAIASRI
IPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAV
LPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGGGDG
TAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK
>Mature_313_residues
THQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTLVVTKIAVAWVVAAIASRII
PEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVL
PFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGGGDGT
AGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=329, Percent_Identity=90.5775075987842, Blast_Score=507, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 32443; Mature: 32312

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHH
TLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGT
HHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
KEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFF
CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
SKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGGGDG
HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
TAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKV
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KARAAKIEILGTVK
HHHHHEEEEEECCC
>Mature Secondary Structure 
THQPLKICRQVMEMQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITG
CCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHH
TLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGT
HHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
KEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFF
CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
SKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGGGDG
HHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
TAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKV
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KARAAKIEILGTVK
HHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA