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The map label for this gene is yidZ [H]

Identifier: 218692000

GI number: 218692000

Start: 4330275

End: 4331234

Strand: Direct

Name: yidZ [H]

Synonym: ECED1_4402

Alternate gene names: 218692000

Gene position: 4330275-4331234 (Clockwise)

Preceding gene: 218691999

Following gene: 218692001

Centisome position: 83.12

GC content: 52.08

Gene sequence:

>960_bases
ATGAAGAAATCCATCACCACGCTTGATCTCAATCTGCTGCTCTGTCTGCAACTGCTGATGCAGGAGCGCAGCGTGACCAA
AGCGGCGAAGCGGATGAACGTGACCCCTTCGGCGGTGAGTAAGTCGCTGGCAAAGTTAAGAGCGTGGTTTGACGACCCGC
TCTTTGTGAACTCACCGCTGGGCCTGTCTCCCACACCGCTAATGGTCAGCATGGAGCAAAATCTGGCGGAATGGATGCAA
ATGAGCAATCAGTTGCTGGACAAACCACTCCACGAAACGCCGCGCGGTCTTAAGTTCGAACTGGCGGCGGAATCGCCGCT
GATGATGATCATGCTTAATGCGCTGTCGAAACGGATCTACCAACGATACCCGCAGGCGACCATCAAATTACGTAACTGGG
ATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGATATTGGTTTTTCCGGTCGCGAAAGTCATCCCCGTTCGCGG
GAGCTGTTAAGCTCGCTACCGTTAGCCATTGATTATGAAGTGCTGTTTAGTGATGTGCCCTGCGTCTGGTTACGCAAAGA
TCATCCGGCACTGCATGAAGCATGGAATCTGGACACCTTTTTACGTTATCCGCATATCAGCATTTGCTGGGAACAGAGCG
ATACCTGGGCGCTGGACAATGTGTTACAGGAGCTGGGGCGCGAACGCACGATTGCTATGAGCCTGCCGGAATTCGAGCAG
TCACTGTTTATGGCAGCACAGCCCGACAATCTGCTACTGGCGACCGCGCCGCGCTACTGCCAGTACTACAATCAACTCCA
CCAACTGCCGTTGGTTGCTCTTCCTCTCCCGTTTGATGAAAGCCAGCAAAAAAAGCTGGAAGTCCCTTTTACCCTTCTGT
GGCATAAACGGAACAGCCGTAATCCGAAGATCGTCTGGTTACGGGAAACCATTAAAAATCTTTACGCGTCGATGGCATAA

Upstream 100 bases:

>100_bases
ATCGGCGCATGGAATATGCTGATCGGGATTCTGATTGCCTGTAGCATAGTAAGCCTGTTGCTGATTATGTTCGTCGCGCC
TGGACGCCCGGTTGCCGCTC

Downstream 100 bases:

>100_bases
CCGAATCGTATGAAACGCGACCCAATTTCACAATGAAATGTAAAAAAGTTGTAATAAACTTATCTGAATCGAACTTTTAG
CCGCTTTAGTCTGTCCATCA

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYASMA

Sequences:

>Translated_319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYASMA
>Mature_319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSRNPKIVWLRETIKNLYASMA

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=319, Percent_Identity=97.4921630094044, Blast_Score=612, Evalue=1e-176,
Organism=Escherichia coli, GI87081766, Length=315, Percent_Identity=23.8095238095238, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081684, Length=329, Percent_Identity=24.3161094224924, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786820, Length=80, Percent_Identity=40, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36910; Mature: 36910

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPL
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCC
GLSPTPLMVSMEQNLAEWMQMSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIY
CCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP
HHCCCCEEEEECCCCCCHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHCCCC
CVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
EEEEECCCCHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHH
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSR
HHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCEEEEEECCCCC
NPKIVWLRETIKNLYASMA
CCEEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPL
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCC
GLSPTPLMVSMEQNLAEWMQMSNQLLDKPLHETPRGLKFELAAESPLMMIMLNALSKRIY
CCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP
HHCCCCEEEEECCCCCCHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHCCCC
CVWLRKDHPALHEAWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
EEEEECCCCHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHH
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSR
HHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCEEEEEECCCCC
NPKIVWLRETIKNLYASMA
CCEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA