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The map label for this gene is yidL [H]

Identifier: 218691972

GI number: 218691972

Start: 4301134

End: 4302030

Strand: Direct

Name: yidL [H]

Synonym: ECED1_4375

Alternate gene names: 218691972

Gene position: 4301134-4302030 (Clockwise)

Preceding gene: 218691966

Following gene: 218691976

Centisome position: 82.56

GC content: 43.48

Gene sequence:

>897_bases
GTGAGCATAATTCGCCGGAGGGATATTAAAATGAATGGAAAATTGCAAAGTTCGGATGTAAAAAACGAAACTCCGTACAA
TATTCCCTTATTGATTAACGAAAATGTGATCTCCAGCGGAATTTCTCTGATATCGCTCTGGCATACCTACGCCGACGAGC
ATTATCGGGTGATCTGGCCGCGGGACAAGAAGAAACCGCTTATCGCCAACTCATGGGTTGCGGTGTATACCGTACAAGGA
TGTGGGAAAATTCTTTTAAAGAATGACGAACAAATAACTCTGCATGGCAACTGTATTATATTTTTAAAGCCAATGGATAT
TCACTCTTATCACTGTGAAGGTTTGGTCTGGGAACAGTACTGGATGGAATTTACCCCCACCAGTATGATGGATATTCCCG
TCGGTCAGCAAAGCGTTATTTATAATGGCGAAGTTTATAATCAGGAACTCACCGAAGTTGCTGAGTTAATTACTTCACCA
GAAGCAATAAAAAATAATCTGGCAGTCGCTTTTCTGACGAAAATTATTTATCAGTGGATTTGTCTTATGCACACAGTCGG
TAAAAAAGATCCACAACGGCGGCAAATTGAAAAATTAATTGCCACTTTACATGCCAGTCTACAACAACGCTGGAGCGTAG
CTGATATGGCTGCCACGATCCCCTGTAGCGAGGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGCAAGACGCCGAAA
GAATATTACCTCGATGCGCGTCTGGATCTGGCGCTATCGCTATTAAAGCAACAAGGGAACTCGGTTGGCGAAGTCGCTGA
TACGCTCAACTTCTTCGACTCCTTTCATTTCAGCAAAGCCTTTAAGCATAAATTTGGTTATGCGCCGTCAGCTGTGCTGA
AGAATACGGACAGGTAA

Upstream 100 bases:

>100_bases
TGAATATAGGGAGAGGTAAAATGCGTCGGGTCAGGCAGTCAGATTCTTAAAATACAAACGTCGTATCCCTGAACGGATTG
TTTTCTGTTAAGTTCAGGTT

Downstream 100 bases:

>100_bases
TAACCAGAATGGCGAGTGTGTAAATGACTCGATGATGTTCAGAAATACCAGGCGGAGTACCATTTACGGCGACTCCACCG
GGAAAAGAGTTAACCGATAC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSIIRRRDIKMNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIANSWVAVYTVQG
CGKILLKNDEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDIPVGQQSVIYNGEVYNQELTEVAELITSP
EAIKNNLAVAFLTKIIYQWICLMHTVGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPK
EYYLDARLDLALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDR

Sequences:

>Translated_298_residues
MSIIRRRDIKMNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIANSWVAVYTVQG
CGKILLKNDEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDIPVGQQSVIYNGEVYNQELTEVAELITSP
EAIKNNLAVAFLTKIIYQWICLMHTVGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPK
EYYLDARLDLALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDR
>Mature_297_residues
SIIRRRDIKMNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIANSWVAVYTVQGC
GKILLKNDEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDIPVGQQSVIYNGEVYNQELTEVAELITSPE
AIKNNLAVAFLTKIIYQWICLMHTVGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKE
YYLDARLDLALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510985, Length=288, Percent_Identity=97.9166666666667, Blast_Score=592, Evalue=1e-170,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34331; Mature: 34200

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIRRRDIKMNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWP
CCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEC
RDKKKPLIANSWVAVYTVQGCGKILLKNDEQITLHGNCIIFLKPMDIHSYHCEGLVWEQY
CCCCCCEEECCEEEEEEECCCCEEEEECCCEEEEECCEEEEEEECCCCCCCCCCEEHHHH
WMEFTPTSMMDIPVGQQSVIYNGEVYNQELTEVAELITSPEAIKNNLAVAFLTKIIYQWI
HHHCCCCCEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
CLMHTVGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH
EYYLDARLDLALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDR
HHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC
>Mature Secondary Structure 
SIIRRRDIKMNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWP
CCCCCCCCCCCCEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEC
RDKKKPLIANSWVAVYTVQGCGKILLKNDEQITLHGNCIIFLKPMDIHSYHCEGLVWEQY
CCCCCCEEECCEEEEEEECCCCEEEEECCCEEEEECCEEEEEEECCCCCCCCCCEEHHHH
WMEFTPTSMMDIPVGQQSVIYNGEVYNQELTEVAELITSPEAIKNNLAVAFLTKIIYQWI
HHHCCCCCEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
CLMHTVGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPK
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCH
EYYLDARLDLALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDR
HHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]