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The map label for this gene is sgbU [H]

Identifier: 218691872

GI number: 218691872

Start: 4191298

End: 4192158

Strand: Direct

Name: sgbU [H]

Synonym: ECED1_4271

Alternate gene names: 218691872

Gene position: 4191298-4192158 (Clockwise)

Preceding gene: 218691871

Following gene: 218691873

Centisome position: 80.45

GC content: 54.01

Gene sequence:

>861_bases
GTGCGTAATCATCCGTTAGGCATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTACTGGCAAA
AAGCTGTGGTTTTGATTTTGTCGAAATGTCGGTGGATGAAACCGACGAACGGTTGTCACGTCTTGACTGGAGCGCCGCAC
AACGTGCTTCGCTGGTCACTGCGATGATCGAAACGGGTGTTGCTATTCCGTCAATGTGCCTGTCCGCACATCGTCGTTTT
CCTTTTGGTAGCCGGGACGACGCCGTGCGCCAGCGGGCGCGGGAGATTATGAGTAAAGCGATTCGCCTGGCGCGCGATCT
CGGCATTCGTACTATTCAACTGGCAGGTTACGACGTCTATTACGAGGATCATGACGAAGGCACCCAGCAACGGTTTGCTG
AAGGGCTGGCGTGGGCGGTTGAACAGGCAGCGGCATCACAAGTCATGCTGGCGGTGGAGATTATGGACACCGCGTTTATG
AACTCTATCAGCAAATGGAAAAAGTGGGACGAAATGCTTGCGTCACCGTGGTTCACCGTTTACCCGGACGTAGGCAATCT
CAGCGCCTGGGGCAATGATGTTCCCGCCGAACTGAAACTGGGCATCGACCGTATCGCCGCCATCCACCTGAAAGACACTC
AACCCGTTACCGAACATAGCCCCGGACAGTTCCGCGATGTGCCGTTTGGCGAAGGCTGTGTCGATTTTGTTGGCATCTTC
AAAACGCTGCATGAGCTGAACTATCGCGGATCATTTCTGATTGAAATGTGGACCGAAAAAGCCAAAGAACCGGTGCTGGA
GATTATTCAGGCGCGGCGCTGGATTGAAGCGCGTATGCAGGAGGCCGGATTTATATGTTAG

Upstream 100 bases:

>100_bases
AAAGCGTTTATTGCCGGACGGGCGCTGGCAGGCGCAGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGA
CTCCATCTGGGGAGGCAAGC

Downstream 100 bases:

>100_bases
AGCAACTGAAAGCCGACATGCTGGCGGCAAACCTGGCGCTTCCCGTTCATCATCTGGTGACGTTCACCTGGGGCAATGTC
AGCGCGATAGACGAAACGCG

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: L-xylulose-5-phosphate 3-epimerase [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVTAMIETGVAIPSMCLSAHRRF
PFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVMLAVEIMDTAFM
NSISKWKKWDEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPFGEGCVDFVGIF
KTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC

Sequences:

>Translated_286_residues
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVTAMIETGVAIPSMCLSAHRRF
PFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVMLAVEIMDTAFM
NSISKWKKWDEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPFGEGCVDFVGIF
KTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC
>Mature_286_residues
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVTAMIETGVAIPSMCLSAHRRF
PFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVYYEDHDEGTQQRFAEGLAWAVEQAAASQVMLAVEIMDTAFM
NSISKWKKWDEMLASPWFTVYPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPFGEGCVDFVGIF
KTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC

Specific function: Catalyzes the isomerization of L-xylulose-5-phosphate to L-ribulose-5-phosphate (Potential). May be involved in the utilization of 2,3-diketo-L-gulonate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=286, Percent_Identity=96.5034965034965, Blast_Score=573, Evalue=1e-165,
Organism=Escherichia coli, GI1790641, Length=281, Percent_Identity=59.0747330960854, Blast_Score=342, Evalue=2e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.1.3.22 [H]

Molecular weight: Translated: 32477; Mature: 32477

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVT
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHCHHHHHHHHHHH
AMIETGVAIPSMCLSAHRRFPFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVY
HHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEDHDEGTQQRFAEGLAWAVEQAAASQVMLAVEIMDTAFMNSISKWKKWDEMLASPWFTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
YPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPFGEGCVDFVGIF
CCCCCCCCCCCCCCCHHHHHCHHHHEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLDWSAAQRASLVT
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHCHHHHHHHHHHH
AMIETGVAIPSMCLSAHRRFPFGSRDDAVRQRAREIMSKAIRLARDLGIRTIQLAGYDVY
HHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEDHDEGTQQRFAEGLAWAVEQAAASQVMLAVEIMDTAFMNSISKWKKWDEMLASPWFTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
YPDVGNLSAWGNDVPAELKLGIDRIAAIHLKDTQPVTEHSPGQFRDVPFGEGCVDFVGIF
CCCCCCCCCCCCCCCHHHHHCHHHHEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KTLHELNYRGSFLIEMWTEKAKEPVLEIIQARRWIEARMQEAGFIC
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]