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The map label for this gene is ygaD

Identifier: 218690822

GI number: 218690822

Start: 3088296

End: 3088793

Strand: Reverse

Name: ygaD

Synonym: ECED1_3149

Alternate gene names: 218690822

Gene position: 3088793-3088296 (Counterclockwise)

Preceding gene: 218690823

Following gene: 218690821

Centisome position: 59.29

GC content: 55.62

Gene sequence:

>498_bases
ATGACTGACAGTGAACTGATGCAGTTAAGCGAACAGGTTGGGCAGGCGCTGAAAGCCCGTGGCGCAACCGTAACAACTGC
TGAGTCTTGTACCGGCGGTTGGGTAGCGAAAGTGATTACCGATATTGCCGGCAGTTCCGCCTGGTTTGAACGCGGATTTG
TCACCTACAGTAACGAAGCAAAAGCGCAAATGATCGGTGTACGCGAAGAGACGCTGGCGCAGCATGGCGCGGTGAGCGAA
CCTGTCGTGGTGGAAATGGCGATAGGCGCACTGAAAGCGGCTCGTGCTGATTACGCCGTGTCTATTAGTGGTATCGCCGG
GCCGGATGGCGGCAGTGAAGAGAAGCCTGTAGGCACCGTCTGGTTTGCTTTTGCCACTGCCCGTGGTGAAGGCATTACCC
GGCGGGAATGTTTCAGCGGTGACCGTGATGCGGTGCGTCGTCAGGCTACTGCGTATGCATTGCAGACCTTGTGGCAACAA
TTTCTACAAAACACTTGA

Upstream 100 bases:

>100_bases
TTTTTTCTGAATCCTCCTCGTAAAATTGCAACGCCAACACCATCTTCCTGACGAAAGTGTTATCTTGTCCGGCATAAATT
TTTGACTGACAGAGGTTGTG

Downstream 100 bases:

>100_bases
TACTGTATGAGCATACAGTATAATTGCTTCAACAGAACATATTGACTATCCGGTATTACCCGGCATGACAGGAGTAAAAA
TGGCTATCGACGAAAACAAA

Product: competence damage-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE
PVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
FLQNT

Sequences:

>Translated_165_residues
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSE
PVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
FLQNT
>Mature_164_residues
TDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEP
VVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQF
LQNT

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family

Homologues:

Organism=Escherichia coli, GI1789052, Length=165, Percent_Identity=100, Blast_Score=334, Evalue=2e-93,
Organism=Escherichia coli, GI1787818, Length=146, Percent_Identity=37.6712328767123, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGAD_ECOL6 (P0A6G4)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_755135.1
- ProteinModelPortal:   P0A6G4
- SMR:   P0A6G4
- EnsemblBacteria:   EBESCT00000043310
- GeneID:   1039043
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c3254
- GeneTree:   EBGT00050000010518
- HOGENOM:   HBG572016
- OMA:   RAFVTYS
- ProtClustDB:   PRK03661
- InterPro:   IPR008136
- TIGRFAMs:   TIGR00199

Pfam domain/function: PF02464 CinA

EC number: NA

Molecular weight: Translated: 17582; Mature: 17451

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEA
CCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHCCCEEECCCC
KAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTV
HHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHH
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT
HHEEEHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEA
CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHCCCEEECCCC
KAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTV
HHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHH
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT
HHEEEHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157