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The map label for this gene is yfdK [H]

Identifier: 218690748

GI number: 218690748

Start: 3025700

End: 3026119

Strand: Reverse

Name: yfdK [H]

Synonym: ECED1_3071

Alternate gene names: 218690748

Gene position: 3026119-3025700 (Counterclockwise)

Preceding gene: 218690749

Following gene: 218690745

Centisome position: 58.09

GC content: 42.86

Gene sequence:

>420_bases
ATGAAAATGAAATGGTCCCCATCTGTTCAGGGATTTTTCTCTGAAAATAACAGCGATATTCCCGATGATACTTTCGATAT
TGAAGATGCTCTTTATTATGAACTTATGAATGGTCAGAGTACGGGGAAAATTATTATCAATAACCCGGATAACTACCCTG
TACTTACTGAATATCCAGCGAAGACACAGGAACAGGAAATAGCTGAAGCGGAGGGAATGAAAAGTATACTTATTGAACAG
GCCAACGAATACATGAACAGTAAGCAATGGCCTGGTAAAGCCGCTATTGGTCGTCTGAAAGGTGAGGAACTGGCGCAATA
TAATTTGTGGCTGGATTATCTGGACGCACTGGAACTGGTTGATACCTCCAGTGCTCCAGATATTGAATGGCCTACGCCTC
CGGCAGTTCAGGCCAGATGA

Upstream 100 bases:

>100_bases
AAGCATATGCAATCTCAGTTAATCGTCACTCTACCGATGTAATTGTCACCTGGAATGCCCGTAAGGCTGATGATGTCCAC
ATTTTAGGAATTGGGAAATT

Downstream 100 bases:

>100_bases
CATCCGGCGCAGTGCTGGTATCTGTTGCCGTCACCGCGTCAATGTAATCCAGCACGGCGTTAAGTCGGGTGGTTTCTGCC
TGCGTCAGCTTCCGCCCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKMKWSPSVQGFFSENNSDIPDDTFDIEDALYYELMNGQSTGKIIINNPDNYPVLTEYPAKTQEQEIAEAEGMKSILIEQ
ANEYMNSKQWPGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR

Sequences:

>Translated_139_residues
MKMKWSPSVQGFFSENNSDIPDDTFDIEDALYYELMNGQSTGKIIINNPDNYPVLTEYPAKTQEQEIAEAEGMKSILIEQ
ANEYMNSKQWPGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
>Mature_139_residues
MKMKWSPSVQGFFSENNSDIPDDTFDIEDALYYELMNGQSTGKIIINNPDNYPVLTEYPAKTQEQEIAEAEGMKSILIEQ
ANEYMNSKQWPGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ymfS [H]

Homologues:

Organism=Escherichia coli, GI1788696, Length=119, Percent_Identity=66.3865546218487, Blast_Score=157, Evalue=3e-40,
Organism=Escherichia coli, GI1787401, Length=139, Percent_Identity=49.6402877697842, Blast_Score=134, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458 [H]

Pfam domain/function: PF02413 Caudo_TAP [H]

EC number: NA

Molecular weight: Translated: 15738; Mature: 15738

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKWSPSVQGFFSENNSDIPDDTFDIEDALYYELMNGQSTGKIIINNPDNYPVLTEYPA
CCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCC
KTQEQEIAEAEGMKSILIEQANEYMNSKQWPGKAAIGRLKGEELAQYNLWLDYLDALELV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DTSSAPDIEWPTPPAVQAR
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKMKWSPSVQGFFSENNSDIPDDTFDIEDALYYELMNGQSTGKIIINNPDNYPVLTEYPA
CCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCC
KTQEQEIAEAEGMKSILIEQANEYMNSKQWPGKAAIGRLKGEELAQYNLWLDYLDALELV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DTSSAPDIEWPTPPAVQAR
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]