Click here to switch to the map view.

The map label for this gene is ychF [H]

Identifier: 218689150

GI number: 218689150

Start: 1339119

End: 1340210

Strand: Reverse

Name: ychF [H]

Synonym: ECED1_1351

Alternate gene names: 218689150

Gene position: 1340210-1339119 (Counterclockwise)

Preceding gene: 218689151

Following gene: 218689149

Centisome position: 25.73

GC content: 51.28

Gene sequence:

>1092_bases
ATGGGATTCAAATGCGGTATCGTCGGTTTGCCCAACGTCGGGAAATCTACCCTGTTCAACGCGCTGACCAAAGCCGGTAT
TGAAGCGGCCAACTTTCCATTCTGCACCATCGAGCCGAACACTGGCGTCGTACCAATGCCTGACCCTCGCCTGGATCAAC
TGGCTGAAATCGTAAAACCGCAGCGTACACTTCCCACGACCATGGAATTTGTCGATATCGCCGGTCTGGTAAAAGGCGCA
TCGAAAGGCGAAGGTCTGGGTAACCAGTTCCTGACCAACATCCGTGAAACCGAAGCGATCGGTCACGTTGTTCGCTGCTT
TGAAAATGACAACATCATTCACGTTTCCGGCAAAGTTAACCCGGCGGATGATATTGAAGTTATCAACACCGAACTGGCGC
TGGCGGATCTCGACACCTGTGAACGTGCGATTCATCGCGTACAGAAGAAAGCCAAAGGTGGCGATAAAGACGCGAAAGCC
GAGCTGGCGGTACTGGAAAAATGCCTGCCCCAGCTGGAAAACGCAGGTATGCTGCGTGCGCTGGATTTAAGCGCTGAAGA
GAAAGCGGCTGTTCGTTACCTGAGCTTCCTGACGCTAAAACCAACAATGTACATCGCCAACGTCAACGAAGACGGTTTTG
AAAACAACCCGTATCTTGACCAGGTGCGTGAAATCGCAGCGAAAGAAGGTTCTGTTGTAGTTCCGGTTTGTGCTGCTGTT
GAAGCAGACATTGCCGAACTGGACGACGAAGAGCGTGACGAGTTTATGCAGGAGCTTGGGCTGGAAGAGCCGGGCCTGAA
CCGTGTGATCCGTGCCGGTTATAAGCTGCTGAACCTGCAAACTTACTTCACCGCTGGGGTGAAAGAAGTGCGTGCATGGA
CCATTCCGGTTGGTGCAACCGCGCCGCAGGCAGCGGGCAAAATCCATACTGATTTTGAAAAAGGCTTTATCCGTGCACAA
ACCATCTCGTTTGAAGATTTCATCACTTACAAAGGTGAACAAGGCGCGAAAGAAGCAGGCAAAATGCGTGCAGAAGGCAA
AGATTACATCGTTAAAGATGGCGATGTGATGAACTTCCTGTTCAACGTCTAA

Upstream 100 bases:

>100_bases
TTTTTGCCGAGTGCCGTGTATAATAGGCAAAGTTATTTCCATTTCTGCAATCTGTTAGCAATAACAGGTTGATTATTAAG
ATATTAAGGTGATTTAAATC

Downstream 100 bases:

>100_bases
TTCCGCTAATACTACCCTGGCGGTTAATAACGAGCCATTATGTGAGTTGCACGTAATGGCTTTTTTACGCCTGCTACGCG
TCTTCTTTCAATTCTGAGTT

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGA
SKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
ELAVLEKCLPQLENAGMLRALDLSAEEKAAVRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQ
TISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV

Sequences:

>Translated_363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGA
SKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
ELAVLEKCLPQLENAGMLRALDLSAEEKAAVRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQ
TISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV
>Mature_362_residues
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGAS
KGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAE
LAVLEKCLPQLENAGMLRALDLSAEEKAAVRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAVE
ADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQT
ISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=44.7154471544715, Blast_Score=308, Evalue=4e-84,
Organism=Homo sapiens, GI58761502, Length=227, Percent_Identity=39.647577092511, Blast_Score=157, Evalue=1e-38,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=99.7245179063361, Blast_Score=741, Evalue=0.0,
Organism=Escherichia coli, GI1789574, Length=127, Percent_Identity=31.496062992126, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=41.3698630136986, Blast_Score=289, Evalue=1e-78,
Organism=Saccharomyces cerevisiae, GI6319499, Length=368, Percent_Identity=39.4021739130435, Blast_Score=262, Evalue=7e-71,
Organism=Saccharomyces cerevisiae, GI6321773, Length=381, Percent_Identity=34.6456692913386, Blast_Score=196, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6321649, Length=145, Percent_Identity=37.9310344827586, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24640873, Length=366, Percent_Identity=44.2622950819672, Blast_Score=304, Evalue=6e-83,
Organism=Drosophila melanogaster, GI24640877, Length=366, Percent_Identity=44.2622950819672, Blast_Score=304, Evalue=6e-83,
Organism=Drosophila melanogaster, GI24640875, Length=366, Percent_Identity=44.2622950819672, Blast_Score=304, Evalue=6e-83,
Organism=Drosophila melanogaster, GI24640879, Length=328, Percent_Identity=42.0731707317073, Blast_Score=250, Evalue=1e-66,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39654; Mature: 39523

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP
CCEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCC
QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
LDLSAEEKAAVRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
ECCCCHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL
CCHHCCCCCCHHHHCEEEEEEECHHHHEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC
>Mature Secondary Structure 
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP
CEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCC
QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
LDLSAEEKAAVRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
ECCCCHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL
CCHHCCCCCCHHHHCEEEEEEECHHHHEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]