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The map label for this gene is ydcN [C]

Identifier: 218689103

GI number: 218689103

Start: 1293069

End: 1293653

Strand: Direct

Name: ydcN [C]

Synonym: ECED1_1297

Alternate gene names: 218689103

Gene position: 1293069-1293653 (Clockwise)

Preceding gene: 218689098

Following gene: 218689108

Centisome position: 24.82

GC content: 44.27

Gene sequence:

>585_bases
ATGGATAAAAGAGCTAAAAATCAGATAGTCGATAGCGATATTGCACGTTTGTTACTCAAGCTCAGAAAGTCTCGAAACTT
GACTGTTACAGAGCTTGCCCAACGATCTGGTGTCAGTCAGGCGATGATCAGCAAAGTTGAACGAGGCACCTCAAGCCCCA
GTGCAACAATACTTAGTCGGTTAGCTAATGCACTGAATATTACGCTATCAAAGCTTTTTGCAGAGCTTGAGATGCAACAG
AATTCACTTGTACTTTTGGCTGACCAGCAACAACACTGGATTGATGAAGAAACAGGTATTACCCGCTGGTCTTTGTCCCC
AGCGGGTGCATGTCCGGAACTAATAAAAGTTGAAATCCCCCCTATGGGGCAATTGACTATCCCTGCCTCTGCAAATGAGC
ATCTTTCCGGACAAACTCTATGGATGTTAAACGGCAGCCTTGATTTTCGAGTCAATCATCAGACTCATCATTTACAAGCC
GGTGATTGTCTTGCTCTTACCTTTGCCAGCGAGTACCAAATGAGAAACCCAGATAGCGGCCAGAGTTGTTCTTACATTGT
CGCTTTCAGTCAAAAAAATCCATGA

Upstream 100 bases:

>100_bases
GGCTTAAGTTTAGAAAACATGCGTTTTAGACGTAAAAAATCATTTATTTAATCACAACTTATGTAATGGCATAATCAGGT
TGGTGAAAGAGAGGGCGTAA

Downstream 100 bases:

>100_bases
TGTAATTCTCCTGAAATAATCATGTCACATTGCCTTATAAAGATGTAATAGAGGGTAGGGTCTGCCTTGATTGTCCCGCT
CGGAACGTCCTGAAAGTTTA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Transcription Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANALNITLSKLFAELEMQQ
NSLVLLADQQQHWIDEETGITRWSLSPAGACPELIKVEIPPMGQLTIPASANEHLSGQTLWMLNGSLDFRVNHQTHHLQA
GDCLALTFASEYQMRNPDSGQSCSYIVAFSQKNP

Sequences:

>Translated_194_residues
MDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANALNITLSKLFAELEMQQ
NSLVLLADQQQHWIDEETGITRWSLSPAGACPELIKVEIPPMGQLTIPASANEHLSGQTLWMLNGSLDFRVNHQTHHLQA
GDCLALTFASEYQMRNPDSGQSCSYIVAFSQKNP
>Mature_194_residues
MDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANALNITLSKLFAELEMQQ
NSLVLLADQQQHWIDEETGITRWSLSPAGACPELIKVEIPPMGQLTIPASANEHLSGQTLWMLNGSLDFRVNHQTHHLQA
GDCLALTFASEYQMRNPDSGQSCSYIVAFSQKNP

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21443; Mature: 21443

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSR
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHH
LANALNITLSKLFAELEMQQNSLVLLADQQQHWIDEETGITRWSLSPAGACPELIKVEIP
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEECCCCCCCCCCEEEECC
PMGQLTIPASANEHLSGQTLWMLNGSLDFRVNHQTHHLQAGDCLALTFASEYQMRNPDSG
CCCCEEECCCCCCCCCCCEEEEEECCEEEEECCCEEEECCCCEEEEEEECHHCCCCCCCC
QSCSYIVAFSQKNP
CCCEEEEEECCCCC
>Mature Secondary Structure
MDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSR
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHH
LANALNITLSKLFAELEMQQNSLVLLADQQQHWIDEETGITRWSLSPAGACPELIKVEIP
HHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEECCCCCCCCCCEEEECC
PMGQLTIPASANEHLSGQTLWMLNGSLDFRVNHQTHHLQAGDCLALTFASEYQMRNPDSG
CCCCEEECCCCCCCCCCCEEEEEECCEEEEECCCEEEECCCCEEEEEEECHHCCCCCCCC
QSCSYIVAFSQKNP
CCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA