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The map label for this gene is ycfS [H]

Identifier: 218689065

GI number: 218689065

Start: 1255410

End: 1256372

Strand: Reverse

Name: ycfS [H]

Synonym: ECED1_1256

Alternate gene names: 218689065

Gene position: 1256372-1255410 (Counterclockwise)

Preceding gene: 218689066

Following gene: 218689063

Centisome position: 24.12

GC content: 52.75

Gene sequence:

>963_bases
GTGATGATCAAAACGCGTTTTTCTCGCTGGCTAACGTTTTTTACGTTCGCCGCTGCCGTGGCGCTGGCGCTACCGGCAAA
AGCCAACACCTGGCCGCTGCCGTCAGCGGACAGTCGTCTGGTTGGTGAAAACAAATTTCATGTGGTGGAAAATGACGGTG
GTTCTCTGGAAGCGATCGCCAAAAAATATAACGTCGGCTTTCTCGCTCTGTTACAGGCTAACCCCGGCGTTGATCCTTAC
GTACCGCGCGCGGGTAGCGTGTTAACGATCCCGTTGCAAACCCTACTTCCAGACGCGCCGCGCGAAGGCATTGTGATCAA
CATTGCGGAGCTGCGTCTCTATTATTATCCGCCGGGAAAAAATTCGGTAACCGTATATCCCATCGGCATTGGTCAGTTAG
GTGGTGACACGCTGACACCGACAATGGTGACCACTGTTTCTGACAAGCGTGCAAACCCAACCTGGACGCCAACGGCAAAC
ATTCGCGCGCGGTATAAGGCACAGGGAATTGAGTTGCCTGCGGTAGTTCCGGCTGGACCGGATAACCCAATGGGCCATCA
TGCGATTCGTCTGGCGGCCTATGGCGGCGTTTATTTGCTTCACGGTACGAACGCTGATTTCGGCATTGGCATGCGGGTAA
GTTCTGGCTGTATTCGTCTGCGGGATGACGATATCAAAACACTCTTTAGCCAGGTCACCCCAGGCACCAAAGTGAATATC
ATCAACACCCCGATTAAAGTCTCTGCCGAACCAAACGGTGCGCGTCTGGTTGAAGTACATCAGCCGCTGTCAGAGAAGAT
TGATGACGATCCGCAGCTGCTGCCAATTACACTGAATAGCGCAATGCAATCATTTAAAGATGCAGCACAAACTGACGCTG
AATTGATGCAACATGTGATGGATGTCCGTTCCGGGATGCCGGTGGATGTCCGCCGTCATCAAGTGAGCCCACAAACTCTG
TAA

Upstream 100 bases:

>100_bases
ACAAATTCTTTGCACTTCCCTGCATTATCCGACACTGTCACCCTCCATAATTCAGACTTACTTTTTTATTACAATAACCT
TATATTTATTATGGACTTTG

Downstream 100 bases:

>100_bases
AGCTCGGATAAAAAAATCCCCGCGACACGGCATGTCGCGGGGAAAAAAACAAGCAGTAGCAGGCATTAATGAGGGTTAAT
GCTTATTTATAAATTACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPSADSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
IRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAELMQHVMDVRSGMPVDVRRHQVSPQTL

Sequences:

>Translated_320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPSADSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
IRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAELMQHVMDVRSGMPVDVRRHQVSPQTL
>Mature_320_residues
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPSADSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPY
VPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
IRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAELMQHVMDVRSGMPVDVRRHQVSPQTL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=320, Percent_Identity=98.75, Blast_Score=645, Evalue=0.0,
Organism=Escherichia coli, GI1787968, Length=300, Percent_Identity=50.6666666666667, Blast_Score=293, Evalue=9e-81,
Organism=Escherichia coli, GI1787040, Length=311, Percent_Identity=48.8745980707396, Blast_Score=288, Evalue=3e-79,
Organism=Escherichia coli, GI1788299, Length=299, Percent_Identity=48.1605351170569, Blast_Score=274, Evalue=5e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 34682; Mature: 34682

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPSADSRLVGENKFHVVENDGGSLEAIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGP
CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEEE
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAELMQHVM
EECCEEEEECCCCCEEEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
DVRSGMPVDVRRHQVSPQTL
HHHCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPSADSRLVGENKFHVVENDGGSLEAIA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCHHHHH
KKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGK
HHCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCC
NSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGP
CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCC
DNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNI
CCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCEEEEECCHHHHHHHHCCCCCEEEE
INTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPITLNSAMQSFKDAAQTDAELMQHVM
EECCEEEEECCCCCEEEEECCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
DVRSGMPVDVRRHQVSPQTL
HHHCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]