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The map label for this gene is yceD

Identifier: 218689040

GI number: 218689040

Start: 1232776

End: 1233297

Strand: Direct

Name: yceD

Synonym: ECED1_1231

Alternate gene names: 218689040

Gene position: 1232776-1233297 (Clockwise)

Preceding gene: 218689038

Following gene: 218689041

Centisome position: 23.66

GC content: 49.43

Gene sequence:

>522_bases
ATGCAAAAGGTAAAATTACCCCTGACTCTCGATCCGGTTCGTACGGCTCAAAAACGCCTTGATTACCAGGGTATCTATAC
TCCTGATCAGGTTGAGCGCGTCGCCGAATCCGTAGTCAGTGTGGACAGTGATGTGGAATGCTCCATGTCGTTCGCTATCG
ATAACCAACGTCTCGCAGTGTTAAACGGCGATGCGAAGGTGACGGTAACGCTCGAGTGTCAGCGTTGCGGGAAGCCGTTT
ACTCATCAGGTCTACACAACGTATTGTTTTAGTCCTGTGCGTTCAGACGAACAGGCTGAAGCACTGCCGGAAGCGTATGA
ACCGATTGAGGTTAACGAATTCGGTGAAATCGATCTGCTTGCAATGGTTGAAGATGAAATCATCCTCGCCTTGCCGGTAG
TTCCGGTGCATGATTCTGAACACTGTGAAGTGTCCGAAGCGGACATGGTCTTTGGTGAACTGCCTGAAGAAGCGCAAAAG
CCAAACCCATTTGCCGTATTAGCCAGCTTAAAGCGTAAGTAA

Upstream 100 bases:

>100_bases
AAGCAGTAACCCGCAATGTGTGCGAATTATTGGCAAAAGGCAACCACAGGCTGCCTTTTTCTTTGACTCTATGACGTTAC
AAAGTTAATATGCGCGCCCT

Downstream 100 bases:

>100_bases
TTGGTGCTCCCCGTTGGATCGGGGATAAACCGTAATTGAGGAGTAAGGTCCATGGCCGTACAACAGAATAAACCAACCCG
TTCCAAACGTGGCATGCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: G30K

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPF
THQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQK
PNPFAVLASLKRK

Sequences:

>Translated_173_residues
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPF
THQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQK
PNPFAVLASLKRK
>Mature_173_residues
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPF
THQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQK
PNPFAVLASLKRK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159

Homologues:

Organism=Escherichia coli, GI1787329, Length=173, Percent_Identity=100, Blast_Score=354, Evalue=2e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCED_ECO57 (P0AB30)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   B90812
- PIR:   F85671
- RefSeq:   NP_287222.1
- RefSeq:   NP_309493.1
- ProteinModelPortal:   P0AB30
- EnsemblBacteria:   EBESCT00000027737
- EnsemblBacteria:   EBESCT00000057672
- GeneID:   912718
- GeneID:   959432
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1727
- KEGG:   ecs:ECs1466
- GeneTree:   EBGT00050000011000
- HOGENOM:   HBG730729
- OMA:   HVDPRKL
- ProtClustDB:   PRK11193
- BioCyc:   ECOL83334:ECS1466-MONOMER
- InterPro:   IPR003772

Pfam domain/function: PF02620 DUF177

EC number: NA

Molecular weight: Translated: 19315; Mature: 19315

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV
CCEEECCEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL
EECCEEEEEEEEHHHCCCCCCHHHHHEEECCCCCCCHHHHHCHHHCCCCCCCCCCCEEEE
AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
EEECCCEEEEECCEECCCCCCCCCCCHHHHHCCCCHHHCCCCCCEEHHHHHCC
>Mature Secondary Structure
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV
CCEEECCEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
LNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL
EECCEEEEEEEEHHHCCCCCCHHHHHEEECCCCCCCHHHHHCHHHCCCCCCCCCCCEEEE
AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
EEECCCEEEEECCEECCCCCCCCCCCHHHHHCCCCHHHCCCCCCEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796