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The map label for this gene is lom [H]

Identifier: 218688957

GI number: 218688957

Start: 1147006

End: 1147737

Strand: Direct

Name: lom [H]

Synonym: ECED1_1148

Alternate gene names: 218688957

Gene position: 1147006-1147737 (Clockwise)

Preceding gene: 218688956

Following gene: 218688958

Centisome position: 22.02

GC content: 44.4

Gene sequence:

>732_bases
ATGAAACATGCCAGAATTATTTTTGCGTGCACAACTTTTGTGATGAGTTTTGTAGCAGCCCCTGCCTGTGCAGCACAAGG
TGACAGTACAGTTTCTTTCGGATACGCTCATCTTCAGCTCTCTGGACTGAACAATTTTGTTAAGGATTTAAGTCTTTATA
ATCTTGATACTTTTAACCGTTTTACAAACAGACACTACTTCAATTCAGGCGAATATGCAGATGCTTCTGTCCGGGGGCAT
GATGGCAAAGGCAAATCTCCTCAGGGGATGAGCATCAGGTATCGTTATGAGATAACGGATGAGATTGGTGTTATAACATC
TTTTACATGGGCGCGTTCTATGACTAATGCGCAGGCATTTATTGACATTAACCCAGGAGATGAATCCAGAGAGGTTAAAA
ATCCGGCAGCTTCAGCGAGAACTGATATCAGGGCTAATTACTGGAGCCTGTTAGCGGGTCCTTCGTGGCGGTTTAACGAA
TACCTCAGTGTGTATGCAATGGCTGGTATGGGCGTAGCTAAAGTTACCGCTGACCTGAAAATTAAGGACAACATTAACAG
TACCGGTGGATTTTCTGAAAGCAACAGTACGAAAAAAACAGCACTTGCATGGGCTGCTGGTGCACAATTTAACCTGAATG
AAAGTGTTGCTATGGATGTCGCGTATGAAAGCTCCGGATCTGGTGACTGGCGCACGAGCGGGGTTGTTGTAGGTATTGGC
CTGAAATTCTGA

Upstream 100 bases:

>100_bases
CAATATATGACTGATATGCCTGTCAGTATGAATATTAAGTAATAAAACTAAATTCATCTTAGATAATACGGGGTTATTTT
ATTATAGGAAAAGTCTAAAA

Downstream 100 bases:

>100_bases
TCTGTATCCGACAACATGTCATAACCCGCTGTGATGGCGGGTTTTTTGTTGCCCGTGCAGGGCAAAAATCGTAGATTATG
CGCGGGTGCCTTTCGGCTGA

Product: outer membrane protein Lom

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKHARIIFACTTFVMSFVAAPACAAQGDSTVSFGYAHLQLSGLNNFVKDLSLYNLDTFNRFTNRHYFNSGEYADASVRGH
DGKGKSPQGMSIRYRYEITDEIGVITSFTWARSMTNAQAFIDINPGDESREVKNPAASARTDIRANYWSLLAGPSWRFNE
YLSVYAMAGMGVAKVTADLKIKDNINSTGGFSESNSTKKTALAWAAGAQFNLNESVAMDVAYESSGSGDWRTSGVVVGIG
LKF

Sequences:

>Translated_243_residues
MKHARIIFACTTFVMSFVAAPACAAQGDSTVSFGYAHLQLSGLNNFVKDLSLYNLDTFNRFTNRHYFNSGEYADASVRGH
DGKGKSPQGMSIRYRYEITDEIGVITSFTWARSMTNAQAFIDINPGDESREVKNPAASARTDIRANYWSLLAGPSWRFNE
YLSVYAMAGMGVAKVTADLKIKDNINSTGGFSESNSTKKTALAWAAGAQFNLNESVAMDVAYESSGSGDWRTSGVVVGIG
LKF
>Mature_243_residues
MKHARIIFACTTFVMSFVAAPACAAQGDSTVSFGYAHLQLSGLNNFVKDLSLYNLDTFNRFTNRHYFNSGEYADASVRGH
DGKGKSPQGMSIRYRYEITDEIGVITSFTWARSMTNAQAFIDINPGDESREVKNPAASARTDIRANYWSLLAGPSWRFNE
YLSVYAMAGMGVAKVTADLKIKDNINSTGGFSESNSTKKTALAWAAGAQFNLNESVAMDVAYESSGSGDWRTSGVVVGIG
LKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 26478; Mature: 26478

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHARIIFACTTFVMSFVAAPACAAQGDSTVSFGYAHLQLSGLNNFVKDLSLYNLDTFNR
CCCCEEEHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHCCCHHHHH
FTNRHYFNSGEYADASVRGHDGKGKSPQGMSIRYRYEITDEIGVITSFTWARSMTNAQAF
HHCCEECCCCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEHHHHHCCCCCEEE
IDINPGDESREVKNPAASARTDIRANYWSLLAGPSWRFNEYLSVYAMAGMGVAKVTADLK
EEECCCCCCHHHCCCCHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE
IKDNINSTGGFSESNSTKKTALAWAAGAQFNLNESVAMDVAYESSGSGDWRTSGVVVGIG
EECCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCEEEEEEECCCCCCCEEECCEEEEEE
LKF
ECC
>Mature Secondary Structure
MKHARIIFACTTFVMSFVAAPACAAQGDSTVSFGYAHLQLSGLNNFVKDLSLYNLDTFNR
CCCCEEEHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEEEECCHHHHHHHHHHCCCHHHHH
FTNRHYFNSGEYADASVRGHDGKGKSPQGMSIRYRYEITDEIGVITSFTWARSMTNAQAF
HHCCEECCCCCCCCCEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEHHHHHCCCCCEEE
IDINPGDESREVKNPAASARTDIRANYWSLLAGPSWRFNEYLSVYAMAGMGVAKVTADLK
EEECCCCCCHHHCCCCHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE
IKDNINSTGGFSESNSTKKTALAWAAGAQFNLNESVAMDVAYESSGSGDWRTSGVVVGIG
EECCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCEEEEEEECCCCCCCEEECCEEEEEE
LKF
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]