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The map label for this gene is yccR

Identifier: 218688795

GI number: 218688795

Start: 1018339

End: 1018968

Strand: Direct

Name: yccR

Synonym: ECED1_0982

Alternate gene names: 218688795

Gene position: 1018339-1018968 (Clockwise)

Preceding gene: 218688792

Following gene: 218688798

Centisome position: 19.55

GC content: 47.62

Gene sequence:

>630_bases
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Upstream 100 bases:

>100_bases
AAATTAATCTTGCCCCTTAAGAATAAGTTGCCTATTTTCGTAGTTAACGGATCCGTTAATGTGAATCATTCTTTTATGTT
ATGATTTTAAAAGGAATTTT

Downstream 100 bases:

>100_bases
TCTGGCGTTGCAGACGACCAATCTCTGGCAGTAATGCAATCAATAACCCAACTTGTTGTACGACCAGAGGTTCTTTGCTG
TCTGCCCGTGGTTCAAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Sequences:

>Translated_209_residues
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
>Mature_209_residues
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Specific function: Unknown

COG id: COG3070

COG function: function code K; Regulator of competence-specific genes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae DNA transformation protein tfoX

Homologues:

Organism=Escherichia coli, GI1787193, Length=209, Percent_Identity=100, Blast_Score=431, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SXY_ECOLI (P75869)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F64836
- RefSeq:   AP_001589.1
- RefSeq:   NP_415479.1
- ProteinModelPortal:   P75869
- DIP:   DIP-11497N
- IntAct:   P75869
- STRING:   P75869
- EnsemblBacteria:   EBESCT00000003329
- EnsemblBacteria:   EBESCT00000014244
- GeneID:   946504
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0942
- KEGG:   eco:b0959
- EchoBASE:   EB3484
- EcoGene:   EG13720
- eggNOG:   COG3070
- GeneTree:   EBGT00050000011430
- HOGENOM:   HBG391230
- OMA:   QFGGYSI
- ProtClustDB:   CLSK879861
- BioCyc:   EcoCyc:G6494-MONOMER
- Genevestigator:   P75869
- InterPro:   IPR007077
- InterPro:   IPR007076

Pfam domain/function: PF04994 TfoX_C; PF04993 TfoX_N

EC number: NA

Molecular weight: Translated: 24147; Mature: 24147

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHH
VKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLK
HCCCCEEEEHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
DLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHE
HCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHEEHHH
AALPVARRQELAEWADSLTPKQEFPAELE
HHCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCHHHHHHHHHHHHHH
VKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLK
HCCCCEEEEHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
DLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHE
HCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHEEHHH
AALPVARRQELAEWADSLTPKQEFPAELE
HHCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503