Click here to switch to the map view.

The map label for this gene is ybiS [H]

Identifier: 218688603

GI number: 218688603

Start: 813304

End: 814224

Strand: Reverse

Name: ybiS [H]

Synonym: ECED1_0784

Alternate gene names: 218688603

Gene position: 814224-813304 (Counterclockwise)

Preceding gene: 218688605

Following gene: 218688600

Centisome position: 15.63

GC content: 53.09

Gene sequence:

>921_bases
ATGAATATGAAATTGAAAACATTATTCGCAGCGGCCTTCGCTGTTGTCGGCTTTTGCAGTACCGCCTCTGCGGTAACTTA
TCCTCTGCCAACCGACGGGAGTCGCCTGGTTGGTCAGAATCAGGTGATCACCATTCCTGAAGGTAACACTCAGCCGCTGG
AGTATTTTGCCGCCGAGTACCAGATGGGACTTTCCAATATGATGGAAGCGAACCCGGGTGTGGATACCTTCCTGCCGAAA
GGCGGTACTGTACTGAACATTCCGCAGCAGCTGATCCTGCCGGATACCGTTCATGAAGGCATCGTCATTAACAGTGCAGA
GATGCGTCTGTATTACTATCCGAAAGGGACCAACACCGTTATCGTGCTGCCGATCGGCATTGGTCAGTTAGGCAAAGACA
CGCCTATCAACTGGACCACCAAAGTTGAGCGTAAAAAAGCAGGCCCGACCTGGACGCCGACCGCTAAAATGCACGCAGAG
TACCGCGCTGCGGGCGAACCGCTTCCGGCGGTCGTTCCGGCTGGTCCGGATAACCCGATGGGGCTGTATGCACTCTACAT
CGGTCGCCTGTACGCTATCCATGGCACCAACGCCAACTTCGGTATCGGCCTGCGTGTAAGTCATGGTTGTGTGCGTCTGC
GTAACGAAGACATCAAATTCCTGTTCGAGAAAGTACCGGTCGGTACCCGCGTACAGTTTATTGATGAGCCGGTAAAAGCG
ACCACCGAGCCAGACGGCAGCCGTTATATTGAAGTCCATAACCCGCTGTCTACCACTGAAGCCCAGTTTGAAGGTCAGGA
AATTGTGCCAATTACCCTGACGAAGAGCGTGCAGACAGTGACCGGTCAGCCAAATGTTGACCAGGTTGTTCTGGATGAAG
CGATCAAAAATCGTTCCGGGATGCCGGTTCGTCTGAATTAA

Upstream 100 bases:

>100_bases
ACATCTGATTTCACTGTGAGCTGGAATGAACTTATAATGCGCTTCCAATACTCTAATATTCTCAACCCAATGGCCTGCCA
GGCACAAAATCTCGCTTAAC

Downstream 100 bases:

>100_bases
TCTTCAAAACGTAAAGCAAAGGCGGACTCATAATCCGCCTTTTTAATTTGACAGACCTTATCCCGCCGGGATCATAACCA
ACAAAACATATCCCACCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPK
GGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKA
TTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPNVDQVVLDEAIKNRSGMPVRLN

Sequences:

>Translated_306_residues
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPK
GGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKA
TTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPNVDQVVLDEAIKNRSGMPVRLN
>Mature_306_residues
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPK
GGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKA
TTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPNVDQVVLDEAIKNRSGMPVRLN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=306, Percent_Identity=99.6732026143791, Blast_Score=627, Evalue=0.0,
Organism=Escherichia coli, GI1788299, Length=296, Percent_Identity=64.1891891891892, Blast_Score=398, Evalue=1e-112,
Organism=Escherichia coli, GI1787356, Length=311, Percent_Identity=48.2315112540193, Blast_Score=282, Evalue=2e-77,
Organism=Escherichia coli, GI1787968, Length=305, Percent_Identity=45.5737704918033, Blast_Score=239, Evalue=1e-64,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 33325; Mature: 33325

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEY
CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCEEEECCCCCCCHHHHHHHHH
QMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTV
HHHHHHHHHCCCCCCEECCCCCEEEECCHHHCCCCCCCCCEEEECEEEEEEEEECCCCEE
IVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPM
EEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC
GLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKA
HHHHEEEEEEEEEECCCCCEEEEEEEECCEEEECCCCHHHHHHHCCCCCEEEEECCCCCC
TTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPNVDQVVLDEAIKNRSG
CCCCCCCEEEEECCCCCCCHHHCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHCCCC
MPVRLN
CCEEEC
>Mature Secondary Structure
MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVITIPEGNTQPLEYFAAEY
CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCEEEECCCCCCCHHHHHHHHH
QMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTV
HHHHHHHHHCCCCCCEECCCCCEEEECCHHHCCCCCCCCCEEEECEEEEEEEEECCCCEE
IVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPM
EEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC
GLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVPVGTRVQFIDEPVKA
HHHHEEEEEEEEEECCCCCEEEEEEEECCEEEECCCCHHHHHHHCCCCCEEEEECCCCCC
TTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKSVQTVTGQPNVDQVVLDEAIKNRSG
CCCCCCCEEEEECCCCCCCHHHCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHCCCC
MPVRLN
CCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]