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The map label for this gene is ybfE

Identifier: 218688492

GI number: 218688492

Start: 690809

End: 691102

Strand: Reverse

Name: ybfE

Synonym: ECED1_0667

Alternate gene names: 218688492

Gene position: 691102-690809 (Counterclockwise)

Preceding gene: 218688493

Following gene: 218688491

Centisome position: 13.27

GC content: 53.06

Gene sequence:

>294_bases
ATGGCCAAAGAACAAACGGACCGTACGACATTAGATCTGTTCGCGCACGAGCGTCGACCGGGACGACCGAAAACTAATCC
GCTTTCGCGCGATGAACAGCTGCGTATTAATAAACGCAACCAACTAAAACGCGACAAAGTACGTGGCCTTAAGCGTGTCG
AACTGAAGCTGAACGCGGAAGCTGTCGAGGCACTGAACGAGCTGGCGGAATCGCGCAATATGAGCCGTAGCGAGCTGATC
GAAGAGATGTTAATGCAGCAACTGGCGGCGCTGCGTAGTCAGGGCATCGTTTAA

Upstream 100 bases:

>100_bases
CGCGTGGACGTTGGCGTGACTCATCGCGCTGATGTATTATGGCGCGCTATCCATCCGGGCAGGCGCCTGGCTGATTGTTT
CCCCCGAAGTCACCAAGATC

Downstream 100 bases:

>100_bases
ATTTCCACTTTCATGTAGCACAGTGTGCAGTCCTGCTCGTTTGCTGATTCCGCAAGACTGCCTGTTCTGCTATGATTGCC
TTTATCCGTGGGCAATTTTC

Product: LexA regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELI
EEMLMQQLAALRSQGIV

Sequences:

>Translated_97_residues
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELI
EEMLMQQLAALRSQGIV
>Mature_96_residues
AKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIE
EMLMQQLAALRSQGIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081770, Length=97, Percent_Identity=100, Blast_Score=192, Evalue=5e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBFE_ECO57 (P0AAU8)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   D85568
- PIR:   D90718
- RefSeq:   NP_286400.1
- RefSeq:   NP_308743.1
- ProteinModelPortal:   P0AAU8
- EnsemblBacteria:   EBESCT00000027878
- EnsemblBacteria:   EBESCT00000058470
- GeneID:   917085
- GeneID:   957760
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0834
- KEGG:   ecs:ECs0716
- GeneTree:   EBGT00050000011593
- HOGENOM:   HBG297247
- OMA:   QIQRDRA
- ProtClustDB:   PRK11675
- BioCyc:   ECOL83334:ECS0716-MONOMER
- InterPro:   IPR002145

Pfam domain/function: PF01402 RHH_1

EC number: NA

Molecular weight: Translated: 11280; Mature: 11149

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHHHHHHCCHH
AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAE
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHHHHHHCCHH
AVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796